PlantSME Plant secondary metabolism enzyme database

Coffea canephora (coffea_canephora)

Imported from atlas release summary for Coffea canephora.

2031
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 624 19 UGT (265) View species results
Alkaloid pathway 485 26 7DLGT (122) View species results
Phenylpropanoid pathway 327 12 POD (115) View species results
Flavonoid pathway 310 13 UFGT (224) View species results
Rosmarinic acid pathway 145 7 C4H (77) View species results
Steroid pathway 140 12 SMT1/SMT2/SMT3 (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2358 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 274 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ANS/LDOX
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Gene Pathway Family Confidence Status Best Target
Ccane01G0002670.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC
Ccane01G0007270.1 Flavonoid ANS/LDOX medium pass ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC
Ccane03G0005110.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccane03G0005230.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccane03G0008780.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccane03G0011920.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00005__sp_Q96323_LDOX_ARATH
Ccane04G0016900.1 Flavonoid ANS/LDOX low borderline ANS_LDOX__00003__sp_O04274_LDOX_PERFR
Ccane05G0002920.1 Flavonoid ANS/LDOX medium pass ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccane06G0007730.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccane09G0007540.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00005__sp_Q96323_LDOX_ARATH
Ccane11G0001630.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_113570002250.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_1910010130.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_19740010550.1 Flavonoid ANS/LDOX medium pass ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_2680015240.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_2680015250.1 Flavonoid ANS/LDOX medium pass ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_26960015350.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_29620016900.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_5040023540.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_6130026630.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00005__sp_Q96323_LDOX_ARATH
Ccanescaffold_77610031420.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
Ccanescaffold_9180034600.1 Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH