PlantSME Plant secondary metabolism enzyme database

Coffea canephora (coffea_canephora)

Imported from atlas release summary for Coffea canephora.

2031
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.72% Alkaloid pathway 23.88% Phenylpropanoid pathway 16.1% Flavonoid pathway 15.26% Rosmarinic acid pathway 7.14% Steroid pathway 6.89%
Family Distribution
C4H 6.66% C3'H/CYP98A 6.64% UGT 5.13% 7DLGT 4.61% UFGT 4.43% CYP76 4.43% IFS 4.37% BAHD 3.93%
Other Families 59.82%
More Families (97)
T3O 194 3.58% F3H 156 2.88% DWF4/CYP90B1 147 2.71% 4CL 129 2.38% F3'H/CYP75B 124 2.29% POD 121 2.23% BR6OX2/CYP85A2 115 2.12% CODM/T6ODM 100 1.84% CAD 92 1.7% STR 85 1.57% CYP71 84 1.55% H6H 78 1.44% SMT1/SMT2/SMT3 78 1.44% NMT 77 1.42% CAS 75 1.38% SGD 64 1.18% TRI/TRII 61 1.12% TPS 59 1.09% G8O/G8H 56 1.03% GES 55 1.01% IFR 55 1.01% COMT 52 0.96% 7DLH 50 0.92% BBE 49 0.9% T16H 48 0.89% IO 47 0.87% F3'5'H/CYP75A 47 0.87% CYP90D1 44 0.81% F5H/CYP84A 43 0.79% GS 40 0.74% 16OMT 40 0.74% HCT 38 0.7% LAC 37 0.68% SLS 32 0.59% CSE 32 0.59% NCS 31 0.57% LAMT 30 0.55% ANR 30 0.55% TAT 30 0.55% PYKS 28 0.52% DFR 27 0.5% CYP51G1 27 0.5% 8HGO 26 0.48% CCR 26 0.48% BR6OX1/CYP85A1 25 0.46% RAS 23 0.42% CPD/CYP90A1 23 0.42% ANS/LDOX 22 0.41% FNS 22 0.41% ROT3/CYP90C1 21 0.39% PMT 20 0.37% CYP719 20 0.37% COR 15 0.28% XMT_MXMT_DXMT 13 0.24% CYP80B1 12 0.22% PAL 12 0.22% CNMT 9 0.17% MPO 9 0.17% CHS 8 0.15% FPPS 8 0.15% GGPPS 8 0.15% TYDC_DDC 7 0.13% FLS 6 0.11% CCoAOMT 6 0.11% SQE 6 0.11% 6OMT_4OMT_SOMT 5 0.09% CHI 5 0.09% CPR 5 0.09% SQS/FDFT1 5 0.09% DET2 5 0.09% AACT 5 0.09% HMGR 5 0.09% DXR 5 0.09% HPPR 4 0.07% DXS 4 0.07% ISY 3 0.06% TDC 3 0.06% SMO1/SMO2 3 0.06% CPI1 3 0.06% DWF7 3 0.06% CMK/IspE 3 0.06% MVK 3 0.06% PMK 3 0.06% FK 2 0.04% HDS/IspG 2 0.04% MVD 2 0.04% MCT/IspD 2 0.04% ADC 1 0.02% CYP80F1 1 0.02% HYD1 1 0.02% DWF5 1 0.02% DWF1 1 0.02% GPPS 1 0.02% HDR/IspH 1 0.02% HMGS 1 0.02% MDS/IspF 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 624 19 UGT (265) View species results
Alkaloid pathway 485 26 7DLGT (122) View species results
Phenylpropanoid pathway 327 12 POD (115) View species results
Flavonoid pathway 310 13 UFGT (224) View species results
Rosmarinic acid pathway 145 7 C4H (77) View species results
Steroid pathway 140 12 SMT1/SMT2/SMT3 (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2358 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 274 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
Ccanescaffold_11810002890.1 Alkaloid SGD low borderline
Ccanescaffold_13010004490.1 Alkaloid SGD medium pass
Ccanescaffold_21490011740.1 Alkaloid SGD low borderline
Ccanescaffold_25560014440.1 Alkaloid SGD medium pass
Ccanescaffold_2850016260.1 Alkaloid SGD low borderline
Ccanescaffold_4430021700.1 Alkaloid SGD low borderline
Ccanescaffold_4790023040.1 Alkaloid SGD medium pass
Ccanescaffold_5920026240.1 Alkaloid SGD medium pass
Ccanescaffold_5920026250.1 Alkaloid SGD medium pass
Ccanescaffold_75680030970.1 Alkaloid SGD medium pass
Ccanescaffold_7590031010.1 Alkaloid SGD medium pass
Ccanescaffold_92510034740.1 Alkaloid SGD medium pass
Ccanescaffold_94620035120.1 Alkaloid SGD low borderline
Ccanescaffold_96860035450.1 Alkaloid SGD medium pass