Coffea canephora (coffea_canephora)
Imported from atlas release summary for Coffea canephora.
2031
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2031
Candidate Genes
C4H
6.66%
C3'H/CYP98A
6.64%
UGT
5.13%
7DLGT
4.61%
UFGT
4.43%
CYP76
4.43%
IFS
4.37%
BAHD
3.93%
Other Families
59.82%
More Families (97)
T3O
194
3.58%
F3H
156
2.88%
DWF4/CYP90B1
147
2.71%
4CL
129
2.38%
F3'H/CYP75B
124
2.29%
POD
121
2.23%
BR6OX2/CYP85A2
115
2.12%
CODM/T6ODM
100
1.84%
CAD
92
1.7%
STR
85
1.57%
CYP71
84
1.55%
H6H
78
1.44%
SMT1/SMT2/SMT3
78
1.44%
NMT
77
1.42%
CAS
75
1.38%
SGD
64
1.18%
TRI/TRII
61
1.12%
TPS
59
1.09%
G8O/G8H
56
1.03%
GES
55
1.01%
IFR
55
1.01%
COMT
52
0.96%
7DLH
50
0.92%
BBE
49
0.9%
T16H
48
0.89%
IO
47
0.87%
F3'5'H/CYP75A
47
0.87%
CYP90D1
44
0.81%
F5H/CYP84A
43
0.79%
GS
40
0.74%
16OMT
40
0.74%
HCT
38
0.7%
LAC
37
0.68%
SLS
32
0.59%
CSE
32
0.59%
NCS
31
0.57%
LAMT
30
0.55%
ANR
30
0.55%
TAT
30
0.55%
PYKS
28
0.52%
DFR
27
0.5%
CYP51G1
27
0.5%
8HGO
26
0.48%
CCR
26
0.48%
BR6OX1/CYP85A1
25
0.46%
RAS
23
0.42%
CPD/CYP90A1
23
0.42%
ANS/LDOX
22
0.41%
FNS
22
0.41%
ROT3/CYP90C1
21
0.39%
PMT
20
0.37%
CYP719
20
0.37%
COR
15
0.28%
XMT_MXMT_DXMT
13
0.24%
CYP80B1
12
0.22%
PAL
12
0.22%
CNMT
9
0.17%
MPO
9
0.17%
CHS
8
0.15%
FPPS
8
0.15%
GGPPS
8
0.15%
TYDC_DDC
7
0.13%
FLS
6
0.11%
CCoAOMT
6
0.11%
SQE
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
CHI
5
0.09%
CPR
5
0.09%
SQS/FDFT1
5
0.09%
DET2
5
0.09%
AACT
5
0.09%
HMGR
5
0.09%
DXR
5
0.09%
HPPR
4
0.07%
DXS
4
0.07%
ISY
3
0.06%
TDC
3
0.06%
SMO1/SMO2
3
0.06%
CPI1
3
0.06%
DWF7
3
0.06%
CMK/IspE
3
0.06%
MVK
3
0.06%
PMK
3
0.06%
FK
2
0.04%
HDS/IspG
2
0.04%
MVD
2
0.04%
MCT/IspD
2
0.04%
ADC
1
0.02%
CYP80F1
1
0.02%
HYD1
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
GPPS
1
0.02%
HDR/IspH
1
0.02%
HMGS
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 624 | 19 | UGT (265) | View species results |
| Alkaloid pathway | 485 | 26 | 7DLGT (122) | View species results |
| Phenylpropanoid pathway | 327 | 12 | POD (115) | View species results |
| Flavonoid pathway | 310 | 13 | UFGT (224) | View species results |
| Rosmarinic acid pathway | 145 | 7 | C4H (77) | View species results |
| Steroid pathway | 140 | 12 | SMT1/SMT2/SMT3 (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2358 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 274 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccanescaffold_12000003260.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccanescaffold_20860011290.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccanescaffold_26870015260.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccanescaffold_59240026270.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Ccanescaffold_69790029550.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccanescaffold_7110029890.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccanescaffold_73120030460.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccanescaffold_7800031460.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccanescaffold_80320032090.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccanescaffold_8510033120.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccanescaffold_9190034660.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |