PlantSME Plant secondary metabolism enzyme database

Coffea canephora (coffea_canephora)

Imported from atlas release summary for Coffea canephora.

2031
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 624 19 UGT (265) View species results
Alkaloid pathway 485 26 7DLGT (122) View species results
Phenylpropanoid pathway 327 12 POD (115) View species results
Flavonoid pathway 310 13 UFGT (224) View species results
Rosmarinic acid pathway 145 7 C4H (77) View species results
Steroid pathway 140 12 SMT1/SMT2/SMT3 (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2358 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 274 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Ccane01G0001460.1 Alkaloid 7DLGT medium pass
Ccane01G0001470.1 Alkaloid 7DLGT medium pass
Ccane01G0001490.1 Alkaloid 7DLGT low borderline
Ccane01G0002990.1 Alkaloid 7DLGT medium pass
Ccane01G0004240.1 Alkaloid 7DLGT low borderline
Ccane01G0006490.1 Alkaloid 7DLGT high pass
Ccane01G0009180.1 Alkaloid 7DLGT high pass
Ccane01G0009650.1 Alkaloid 7DLGT low borderline
Ccane01G0010570.1 Alkaloid 7DLGT low borderline
Ccane01G0010580.1 Alkaloid 7DLGT medium pass
Ccane01G0013570.1 Alkaloid 7DLGT high pass
Ccane01G0014760.1 Alkaloid 7DLGT low borderline
Ccane01G0014770.1 Alkaloid 7DLGT low borderline
Ccane01G0015810.1 Alkaloid 7DLGT high pass
Ccane01G0015820.1 Alkaloid 7DLGT medium pass
Ccane01G0016500.1 Alkaloid 7DLGT medium pass
Ccane01G0016510.1 Alkaloid 7DLGT low borderline
Ccane01G0016590.1 Alkaloid 7DLGT low borderline
Ccane01G0016600.1 Alkaloid 7DLGT low borderline
Ccane02G0002190.1 Alkaloid 7DLGT low borderline
Ccane02G0007160.1 Alkaloid 7DLGT high pass
Ccane02G0007170.1 Alkaloid 7DLGT medium pass
Ccane02G0007180.1 Alkaloid 7DLGT medium pass
Ccane02G0010010.1 Alkaloid 7DLGT low borderline
Ccane02G0010030.1 Alkaloid 7DLGT low borderline
Ccane02G0010040.1 Alkaloid 7DLGT low borderline
Ccane02G0010050.1 Alkaloid 7DLGT low borderline
Ccane02G0010310.1 Alkaloid 7DLGT high pass
Ccane02G0014190.1 Alkaloid 7DLGT low borderline
Ccane02G0019070.1 Alkaloid 7DLGT low borderline
Ccane02G0019290.1 Alkaloid 7DLGT low borderline
Ccane02G0020860.1 Alkaloid 7DLGT low borderline
Ccane02G0021300.1 Alkaloid 7DLGT high pass
Ccane02G0021310.1 Alkaloid 7DLGT high pass
Ccane02G0021350.1 Alkaloid 7DLGT high pass
Ccane02G0021360.1 Alkaloid 7DLGT medium pass
Ccane02G0024770.1 Alkaloid 7DLGT low borderline
Ccane02G0030770.1 Alkaloid 7DLGT medium pass
Ccane02G0031930.1 Alkaloid 7DLGT medium pass
Ccane02G0031950.1 Alkaloid 7DLGT medium pass
Ccane02G0039100.1 Alkaloid 7DLGT medium pass
Ccane03G0009220.1 Alkaloid 7DLGT low borderline
Ccane03G0009230.1 Alkaloid 7DLGT low borderline
Ccane03G0009270.1 Alkaloid 7DLGT medium pass
Ccane03G0009290.1 Alkaloid 7DLGT medium pass
Ccane03G0009300.1 Alkaloid 7DLGT low borderline
Ccane03G0009310.1 Alkaloid 7DLGT low borderline
Ccane03G0009610.1 Alkaloid 7DLGT medium pass
Ccane03G0009630.1 Alkaloid 7DLGT medium pass
Ccane03G0010530.1 Alkaloid 7DLGT low borderline