Coffea canephora (coffea_canephora)
Imported from atlas release summary for Coffea canephora.
2347
Candidate Protein Records
2031
Pathway-Level Records
5423
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5423
Family-Level Calls
C4H
6.66%
C3'H/CYP98A
6.64%
UGT
5.13%
7DLGT
4.61%
UFGT
4.43%
CYP76
4.43%
IFS
4.37%
BAHD
3.93%
Other Families
59.82%
More Families (97)
T3O
194
3.58%
F3H
156
2.88%
DWF4/CYP90B1
147
2.71%
4CL
129
2.38%
F3'H/CYP75B
124
2.29%
POD
121
2.23%
BR6OX2/CYP85A2
115
2.12%
CODM/T6ODM
100
1.84%
CAD
92
1.7%
STR
85
1.57%
CYP71
84
1.55%
H6H
78
1.44%
SMT1/SMT2/SMT3
78
1.44%
NMT
77
1.42%
CAS
75
1.38%
SGD
64
1.18%
TRI/TRII
61
1.12%
TPS
59
1.09%
G8O/G8H
56
1.03%
GES
55
1.01%
IFR
55
1.01%
COMT
52
0.96%
7DLH
50
0.92%
BBE
49
0.9%
T16H
48
0.89%
IO
47
0.87%
F3'5'H/CYP75A
47
0.87%
CYP90D1
44
0.81%
F5H/CYP84A
43
0.79%
GS
40
0.74%
16OMT
40
0.74%
HCT
38
0.7%
LAC
37
0.68%
SLS
32
0.59%
CSE
32
0.59%
NCS
31
0.57%
LAMT
30
0.55%
ANR
30
0.55%
TAT
30
0.55%
PYKS
28
0.52%
DFR
27
0.5%
CYP51G1
27
0.5%
8HGO
26
0.48%
CCR
26
0.48%
BR6OX1/CYP85A1
25
0.46%
RAS
23
0.42%
CPD/CYP90A1
23
0.42%
ANS/LDOX
22
0.41%
FNS
22
0.41%
ROT3/CYP90C1
21
0.39%
PMT
20
0.37%
CYP719
20
0.37%
COR
15
0.28%
XMT_MXMT_DXMT
13
0.24%
CYP80B1
12
0.22%
PAL
12
0.22%
CNMT
9
0.17%
MPO
9
0.17%
CHS
8
0.15%
FPPS
8
0.15%
GGPPS
8
0.15%
TYDC_DDC
7
0.13%
FLS
6
0.11%
CCoAOMT
6
0.11%
SQE
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
CHI
5
0.09%
CPR
5
0.09%
SQS/FDFT1
5
0.09%
DET2
5
0.09%
AACT
5
0.09%
HMGR
5
0.09%
DXR
5
0.09%
HPPR
4
0.07%
DXS
4
0.07%
ISY
3
0.06%
TDC
3
0.06%
SMO1/SMO2
3
0.06%
CPI1
3
0.06%
DWF7
3
0.06%
CMK/IspE
3
0.06%
MVK
3
0.06%
PMK
3
0.06%
FK
2
0.04%
HDS/IspG
2
0.04%
MVD
2
0.04%
MCT/IspD
2
0.04%
ADC
1
0.02%
CYP80F1
1
0.02%
HYD1
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
GPPS
1
0.02%
HDR/IspH
1
0.02%
HMGS
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 624 | 19 | UGT (265) | View species results |
| Alkaloid pathway | 485 | 26 | 7DLGT (122) | View species results |
| Phenylpropanoid pathway | 327 | 12 | POD (115) | View species results |
| Flavonoid pathway | 310 | 13 | UFGT (224) | View species results |
| Rosmarinic acid pathway | 145 | 7 | C4H (77) | View species results |
| Steroid pathway | 140 | 12 | SMT1/SMT2/SMT3 (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2358 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 274 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccane04G0008080.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Ccane04G0008090.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccane04G0008100.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccane04G0008110.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Ccane04G0008120.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Ccane04G0011500.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccane04G0011510.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccane04G0015620.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccane04G0015630.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccane04G0015650.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccane04G0015660.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccane05G0003040.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccane05G0016430.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccane06G0000670.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccane06G0002270.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Ccane06G0002880.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccane06G0014660.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccane06G0021140.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccane06G0021150.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccane06G0022850.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccane06G0022860.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccane06G0023790.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccane09G0001030.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccane09G0003950.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Ccane09G0007280.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccane11G0004610.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccane11G0016580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccanescaffold_116300002680.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccanescaffold_12000003260.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccanescaffold_20860011290.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccanescaffold_26870015260.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccanescaffold_59240026270.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Ccanescaffold_69790029550.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccanescaffold_7110029890.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccanescaffold_73120030460.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccanescaffold_7800031460.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccanescaffold_80320032090.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccanescaffold_8510033120.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccanescaffold_9190034660.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccane01G0017720.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Ccane05G0004740.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Ccane05G0004750.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Ccane09G0008440.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Ccane09G0008450.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Ccane11G0006290.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Ccanescaffold_17240008520.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Ccane01G0000510.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Ccane01G0000560.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Ccane01G0000620.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Ccane01G0002180.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |