PlantSME Plant secondary metabolism enzyme database

Coffea canephora (coffea_canephora)

Imported from atlas release summary for Coffea canephora.

2031
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 624 19 UGT (265) View species results
Alkaloid pathway 485 26 7DLGT (122) View species results
Phenylpropanoid pathway 327 12 POD (115) View species results
Flavonoid pathway 310 13 UFGT (224) View species results
Rosmarinic acid pathway 145 7 C4H (77) View species results
Steroid pathway 140 12 SMT1/SMT2/SMT3 (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2358 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 274 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Ccane06G0017810.1 Alkaloid 7DLGT low borderline
Ccane06G0017820.1 Alkaloid 7DLGT low borderline
Ccane06G0017830.1 Alkaloid 7DLGT low borderline
Ccane06G0017840.1 Alkaloid 7DLGT low borderline
Ccane06G0017850.1 Alkaloid 7DLGT low borderline
Ccane06G0019500.1 Alkaloid 7DLGT medium pass
Ccane06G0019530.1 Alkaloid 7DLGT medium pass
Ccane06G0019560.1 Alkaloid 7DLGT medium pass
Ccane06G0019570.1 Alkaloid 7DLGT medium pass
Ccane06G0019580.1 Alkaloid 7DLGT medium pass
Ccane06G0019590.1 Alkaloid 7DLGT medium pass
Ccane06G0019600.1 Alkaloid 7DLGT medium pass
Ccane06G0020110.1 Alkaloid 7DLGT low borderline
Ccane06G0022480.1 Alkaloid 7DLGT low borderline
Ccane06G0022490.1 Alkaloid 7DLGT low borderline
Ccane06G0022610.1 Alkaloid 7DLGT low borderline
Ccane07G0002370.1 Alkaloid 7DLGT low borderline
Ccane07G0004130.1 Alkaloid 7DLGT medium pass
Ccane07G0009110.1 Alkaloid 7DLGT medium pass
Ccane07G0009120.1 Alkaloid 7DLGT medium pass
Ccane07G0013900.1 Alkaloid 7DLGT low borderline
Ccane07G0013910.1 Alkaloid 7DLGT low borderline
Ccane07G0013920.1 Alkaloid 7DLGT low borderline
Ccane07G0013930.1 Alkaloid 7DLGT low borderline
Ccane07G0013940.1 Alkaloid 7DLGT low borderline
Ccane07G0013950.1 Alkaloid 7DLGT low borderline
Ccane07G0013960.1 Alkaloid 7DLGT low borderline
Ccane07G0014880.1 Alkaloid 7DLGT high pass
Ccane07G0014900.1 Alkaloid 7DLGT medium pass
Ccane07G0014930.1 Alkaloid 7DLGT medium pass
Ccane07G0014940.1 Alkaloid 7DLGT medium pass
Ccane07G0014950.1 Alkaloid 7DLGT high pass
Ccane07G0014960.1 Alkaloid 7DLGT high pass
Ccane07G0016930.1 Alkaloid 7DLGT low borderline
Ccane07G0018040.1 Alkaloid 7DLGT low borderline
Ccane07G0019230.1 Alkaloid 7DLGT high pass
Ccane07G0020320.1 Alkaloid 7DLGT high pass
Ccane07G0020330.1 Alkaloid 7DLGT high pass
Ccane08G0004350.1 Alkaloid 7DLGT low borderline
Ccane08G0004700.1 Alkaloid 7DLGT low borderline
Ccane08G0006450.1 Alkaloid 7DLGT medium pass
Ccane08G0007140.1 Alkaloid 7DLGT medium pass
Ccane08G0008980.1 Alkaloid 7DLGT low borderline
Ccane08G0015860.1 Alkaloid 7DLGT medium pass
Ccane08G0015870.1 Alkaloid 7DLGT medium pass
Ccane09G0003660.1 Alkaloid 7DLGT low borderline
Ccane09G0005970.1 Alkaloid 7DLGT medium pass
Ccane09G0008130.1 Alkaloid 7DLGT medium pass
Ccane09G0008150.1 Alkaloid 7DLGT high pass
Ccane09G0008180.1 Alkaloid 7DLGT low borderline