PlantSME Plant secondary metabolism enzyme database

Corydalis tomentella (corydalis_tomentella)

Imported from atlas release summary for Corydalis tomentella.

1121
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.81% Phenylpropanoid pathway 22.03% Alkaloid pathway 21.5% Flavonoid pathway 12.58% Rosmarinic acid pathway 9.19% Steroid pathway 5.89%
Family Distribution
C4H 6.77% C3'H/CYP98A 6.51% BAHD 5.71% IFS 4.14% POD 4.01% T3O 3.56% UGT 3.56% CYP76 3.5%
Other Families 62.24%
More Families (96)
7DLGT 99 3.18% UFGT 99 3.18% DWF4/CYP90B1 89 2.86% 4CL 87 2.79% F3H 84 2.69% BR6OX2/CYP85A2 71 2.28% F3'H/CYP75B 70 2.25% CYP71 63 2.02% NMT 59 1.89% H6H 52 1.67% T16H 46 1.48% STR 45 1.44% CODM/T6ODM 41 1.32% IFR 40 1.28% CAD 39 1.25% HCT 36 1.15% SMT1/SMT2/SMT3 36 1.15% BBE 33 1.06% CYP90D1 32 1.03% ROT3/CYP90C1 31 0.99% CAS 31 0.99% CSE 29 0.93% 7DLH 28 0.9% CNMT 25 0.8% TRI/TRII 25 0.8% IO 24 0.77% F3'5'H/CYP75A 24 0.77% LAC 24 0.77% PYKS 23 0.74% COMT 23 0.74% RAS 22 0.71% NCS 21 0.67% G8O/G8H 20 0.64% GS 20 0.64% TAT 20 0.64% TPS 20 0.64% GES 19 0.61% 16OMT 19 0.61% FNS 18 0.58% ANR 18 0.58% CCR 18 0.58% F5H/CYP84A 18 0.58% COR 16 0.51% SGD 16 0.51% ANS/LDOX 15 0.48% PMT 13 0.42% SLS 13 0.42% CPD/CYP90A1 13 0.42% 8HGO 12 0.38% PAL 12 0.38% LAMT 10 0.32% MVK 10 0.32% MPO 9 0.29% DFR 9 0.29% CPR 8 0.26% CYP51G1 8 0.26% AACT 8 0.26% CYP719 7 0.22% BR6OX1/CYP85A1 7 0.22% GGPPS 7 0.22% CCoAOMT 6 0.19% FPPS 6 0.19% CYP80B1 5 0.16% CHI 5 0.16% HPPR 5 0.16% SMO1/SMO2 5 0.16% SQS/FDFT1 5 0.16% DXS 5 0.16% TYDC_DDC 4 0.13% FLS 4 0.13% DET2 4 0.13% FK 4 0.13% HMGR 4 0.13% ISY 3 0.1% TDC 3 0.1% CHS 3 0.1% MCT/IspD 3 0.1% MVD 3 0.1% 6OMT_4OMT_SOMT 2 0.06% XMT_MXMT_DXMT 2 0.06% ODC 2 0.06% SQE 2 0.06% DWF7 2 0.06% HYD1 2 0.06% DWF1 2 0.06% PMK 2 0.06% DXR 2 0.06% IDI 2 0.06% HMGS 2 0.06% ADC 1 0.03% CPI1 1 0.03% DWF5 1 0.03% MDS/IspF 1 0.03% CMK/IspE 1 0.03% HDR/IspH 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 323 19 BAHD (124) View species results
Phenylpropanoid pathway 247 12 POD (110) View species results
Alkaloid pathway 241 21 7DLGT (47) View species results
Flavonoid pathway 141 10 UFGT (92) View species results
Rosmarinic acid pathway 103 7 C4H (42) View species results
Steroid pathway 66 11 CAS (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1332 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 236 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
GWHPAORS013875 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
GWHPAORS029435 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
GWHPAORS030961 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
GWHPAORS031283 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO