PlantSME Plant secondary metabolism enzyme database

Cucurbita pepo (cucurbita_pepo)

Imported from atlas release summary for Cucurbita pepo.

828
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.28% Phenylpropanoid pathway 22.58% Alkaloid pathway 21.38% Flavonoid pathway 8.82% Steroid pathway 8.45% Rosmarinic acid pathway 7.49%
Family Distribution
BAHD 7.67% C4H 5.96% POD 4.81% C3'H/CYP98A 4.43% 4CL 4.09% F3H 3.66% NMT 3.62% UGT 3.07%
Other Families 62.69%
More Families (93)
CYP76 71 3.02% IFS 68 2.9% 7DLGT 58 2.47% STR 56 2.39% CODM/T6ODM 55 2.34% T3O 51 2.17% SMT1/SMT2/SMT3 47 2.0% H6H 37 1.58% F3'H/CYP75B 37 1.58% UFGT 35 1.49% DWF4/CYP90B1 33 1.41% IFR 30 1.28% CSE 30 1.28% CAS 30 1.28% BR6OX2/CYP85A2 29 1.24% PYKS 28 1.19% HCT 28 1.19% CAD 27 1.15% FNS 26 1.11% T16H 25 1.06% TAT 25 1.06% NCS 24 1.02% GS 23 0.98% G8O/G8H 23 0.98% RAS 23 0.98% CYP71 23 0.98% SGD 20 0.85% CCR 20 0.85% 8HGO 19 0.81% ANR 18 0.77% CYP90D1 18 0.77% TRI/TRII 17 0.72% PMT 16 0.68% ANS/LDOX 16 0.68% COMT 16 0.68% SLS 15 0.64% DFR 15 0.64% 16OMT 14 0.6% TPS 14 0.6% GES 13 0.55% IO 13 0.55% F3'5'H/CYP75A 13 0.55% F5H/CYP84A 13 0.55% LAC 13 0.55% CNMT 12 0.51% BR6OX1/CYP85A1 12 0.51% CYP719 10 0.43% CPR 10 0.43% CPD/CYP90A1 10 0.43% CHS 9 0.38% AACT 9 0.38% CYP80B1 8 0.34% COR 8 0.34% SQS/FDFT1 8 0.34% ROT3/CYP90C1 8 0.34% DXS 8 0.34% HPPR 7 0.3% SMO1/SMO2 7 0.3% 7DLH 6 0.26% CYP51G1 6 0.26% SQE 6 0.26% FPPS 6 0.26% LAMT 5 0.21% MPO 5 0.21% CCoAOMT 5 0.21% GGPPS 5 0.21% MVD 5 0.21% PMK 5 0.21% MVK 5 0.21% HMGR 5 0.21% ISY 4 0.17% DWF1 4 0.17% DET2 4 0.17% IDI 4 0.17% TYDC_DDC 3 0.13% CHI 3 0.13% HDS/IspG 3 0.13% MDS/IspF 3 0.13% HDR/IspH 3 0.13% TDC 2 0.09% ADC 2 0.09% ODC 2 0.09% XMT_MXMT_DXMT 2 0.09% 6OMT_4OMT_SOMT 2 0.09% HYD1 2 0.09% DWF7 2 0.09% FK 2 0.09% CPI1 2 0.09% HMGS 2 0.09% MCT/IspD 2 0.09% DXR 2 0.09% DWF5 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 259 19 BAHD (123) View species results
Phenylpropanoid pathway 187 11 POD (93) View species results
Alkaloid pathway 177 22 NMT (36) View species results
Flavonoid pathway 73 9 UFGT (29) View species results
Steroid pathway 70 11 CAS (24) View species results
Rosmarinic acid pathway 62 6 4CL (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 736 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Cpep02G0008350.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Cpep04G0006130.1 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Cpep06G0007730.1 Terpenoid FPPS medium borderline FPPS__00007__sp_P80042_GGPPS_CAPAN
Cpep15G0003830.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Cpep16G0006540.1 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Cpep20G0006720.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI