PlantSME Plant secondary metabolism enzyme database

Cucurbita pepo (cucurbita_pepo)

Imported from atlas release summary for Cucurbita pepo.

828
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.28% Phenylpropanoid pathway 22.58% Alkaloid pathway 21.38% Flavonoid pathway 8.82% Steroid pathway 8.45% Rosmarinic acid pathway 7.49%
Family Distribution
BAHD 7.67% C4H 5.96% POD 4.81% C3'H/CYP98A 4.43% 4CL 4.09% F3H 3.66% NMT 3.62% UGT 3.07%
Other Families 62.69%
More Families (93)
CYP76 71 3.02% IFS 68 2.9% 7DLGT 58 2.47% STR 56 2.39% CODM/T6ODM 55 2.34% T3O 51 2.17% SMT1/SMT2/SMT3 47 2.0% H6H 37 1.58% F3'H/CYP75B 37 1.58% UFGT 35 1.49% DWF4/CYP90B1 33 1.41% IFR 30 1.28% CSE 30 1.28% CAS 30 1.28% BR6OX2/CYP85A2 29 1.24% PYKS 28 1.19% HCT 28 1.19% CAD 27 1.15% FNS 26 1.11% T16H 25 1.06% TAT 25 1.06% NCS 24 1.02% GS 23 0.98% G8O/G8H 23 0.98% RAS 23 0.98% CYP71 23 0.98% SGD 20 0.85% CCR 20 0.85% 8HGO 19 0.81% ANR 18 0.77% CYP90D1 18 0.77% TRI/TRII 17 0.72% PMT 16 0.68% ANS/LDOX 16 0.68% COMT 16 0.68% SLS 15 0.64% DFR 15 0.64% 16OMT 14 0.6% TPS 14 0.6% GES 13 0.55% IO 13 0.55% F3'5'H/CYP75A 13 0.55% F5H/CYP84A 13 0.55% LAC 13 0.55% CNMT 12 0.51% BR6OX1/CYP85A1 12 0.51% CYP719 10 0.43% CPR 10 0.43% CPD/CYP90A1 10 0.43% CHS 9 0.38% AACT 9 0.38% CYP80B1 8 0.34% COR 8 0.34% SQS/FDFT1 8 0.34% ROT3/CYP90C1 8 0.34% DXS 8 0.34% HPPR 7 0.3% SMO1/SMO2 7 0.3% 7DLH 6 0.26% CYP51G1 6 0.26% SQE 6 0.26% FPPS 6 0.26% LAMT 5 0.21% MPO 5 0.21% CCoAOMT 5 0.21% GGPPS 5 0.21% MVD 5 0.21% PMK 5 0.21% MVK 5 0.21% HMGR 5 0.21% ISY 4 0.17% DWF1 4 0.17% DET2 4 0.17% IDI 4 0.17% TYDC_DDC 3 0.13% CHI 3 0.13% HDS/IspG 3 0.13% MDS/IspF 3 0.13% HDR/IspH 3 0.13% TDC 2 0.09% ADC 2 0.09% ODC 2 0.09% XMT_MXMT_DXMT 2 0.09% 6OMT_4OMT_SOMT 2 0.09% HYD1 2 0.09% DWF7 2 0.09% FK 2 0.09% CPI1 2 0.09% HMGS 2 0.09% MCT/IspD 2 0.09% DXR 2 0.09% DWF5 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 259 19 BAHD (123) View species results
Phenylpropanoid pathway 187 11 POD (93) View species results
Alkaloid pathway 177 22 NMT (36) View species results
Flavonoid pathway 73 9 UFGT (29) View species results
Steroid pathway 70 11 CAS (24) View species results
Rosmarinic acid pathway 62 6 4CL (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 736 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
Cpep02G0007380.1 Alkaloid SGD medium pass
Cpep02G0013370.1 Alkaloid SGD low borderline
Cpep03G0007410.1 Alkaloid SGD medium pass
Cpep03G0007770.1 Alkaloid SGD low borderline
Cpep04G0009330.1 Alkaloid SGD medium pass
Cpep06G0007070.1 Alkaloid SGD medium pass
Cpep07G0000820.1 Alkaloid SGD medium pass
Cpep09G0008980.1 Alkaloid SGD medium pass
Cpep11G0003840.1 Alkaloid SGD medium pass
Cpep12G0003370.1 Alkaloid SGD low borderline
Cpep14G0005750.1 Alkaloid SGD medium pass
Cpep17G0006650.1 Alkaloid SGD low borderline
Cpep18G0001480.1 Alkaloid SGD medium pass
Cpep18G0001490.1 Alkaloid SGD low borderline
Cpep18G0001500.1 Alkaloid SGD low borderline
Cpep18G0001510.1 Alkaloid SGD medium pass
Cpep18G0001520.1 Alkaloid SGD low borderline
Cpep18G0001530.1 Alkaloid SGD low borderline
Cpep18G0001540.1 Alkaloid SGD medium pass
Cpep20G0001430.1 Alkaloid SGD medium pass