PlantSME Plant secondary metabolism enzyme database

Cucurbita pepo (cucurbita_pepo)

Imported from atlas release summary for Cucurbita pepo.

828
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.28% Phenylpropanoid pathway 22.58% Alkaloid pathway 21.38% Flavonoid pathway 8.82% Steroid pathway 8.45% Rosmarinic acid pathway 7.49%
Family Distribution
BAHD 7.67% C4H 5.96% POD 4.81% C3'H/CYP98A 4.43% 4CL 4.09% F3H 3.66% NMT 3.62% UGT 3.07%
Other Families 62.69%
More Families (93)
CYP76 71 3.02% IFS 68 2.9% 7DLGT 58 2.47% STR 56 2.39% CODM/T6ODM 55 2.34% T3O 51 2.17% SMT1/SMT2/SMT3 47 2.0% H6H 37 1.58% F3'H/CYP75B 37 1.58% UFGT 35 1.49% DWF4/CYP90B1 33 1.41% IFR 30 1.28% CSE 30 1.28% CAS 30 1.28% BR6OX2/CYP85A2 29 1.24% PYKS 28 1.19% HCT 28 1.19% CAD 27 1.15% FNS 26 1.11% T16H 25 1.06% TAT 25 1.06% NCS 24 1.02% GS 23 0.98% G8O/G8H 23 0.98% RAS 23 0.98% CYP71 23 0.98% SGD 20 0.85% CCR 20 0.85% 8HGO 19 0.81% ANR 18 0.77% CYP90D1 18 0.77% TRI/TRII 17 0.72% PMT 16 0.68% ANS/LDOX 16 0.68% COMT 16 0.68% SLS 15 0.64% DFR 15 0.64% 16OMT 14 0.6% TPS 14 0.6% GES 13 0.55% IO 13 0.55% F3'5'H/CYP75A 13 0.55% F5H/CYP84A 13 0.55% LAC 13 0.55% CNMT 12 0.51% BR6OX1/CYP85A1 12 0.51% CYP719 10 0.43% CPR 10 0.43% CPD/CYP90A1 10 0.43% CHS 9 0.38% AACT 9 0.38% CYP80B1 8 0.34% COR 8 0.34% SQS/FDFT1 8 0.34% ROT3/CYP90C1 8 0.34% DXS 8 0.34% HPPR 7 0.3% SMO1/SMO2 7 0.3% 7DLH 6 0.26% CYP51G1 6 0.26% SQE 6 0.26% FPPS 6 0.26% LAMT 5 0.21% MPO 5 0.21% CCoAOMT 5 0.21% GGPPS 5 0.21% MVD 5 0.21% PMK 5 0.21% MVK 5 0.21% HMGR 5 0.21% ISY 4 0.17% DWF1 4 0.17% DET2 4 0.17% IDI 4 0.17% TYDC_DDC 3 0.13% CHI 3 0.13% HDS/IspG 3 0.13% MDS/IspF 3 0.13% HDR/IspH 3 0.13% TDC 2 0.09% ADC 2 0.09% ODC 2 0.09% XMT_MXMT_DXMT 2 0.09% 6OMT_4OMT_SOMT 2 0.09% HYD1 2 0.09% DWF7 2 0.09% FK 2 0.09% CPI1 2 0.09% HMGS 2 0.09% MCT/IspD 2 0.09% DXR 2 0.09% DWF5 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 259 19 BAHD (123) View species results
Phenylpropanoid pathway 187 11 POD (93) View species results
Alkaloid pathway 177 22 NMT (36) View species results
Flavonoid pathway 73 9 UFGT (29) View species results
Steroid pathway 70 11 CAS (24) View species results
Rosmarinic acid pathway 62 6 4CL (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 736 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
Cpep01G0015210.1 Alkaloid PMT medium borderline
Cpep03G0007660.1 Alkaloid PMT low borderline
Cpep04G0016270.1 Alkaloid PMT medium pass
Cpep05G0006060.1 Alkaloid PMT medium borderline
Cpep06G0000950.1 Alkaloid PMT low borderline
Cpep07G0000020.1 Alkaloid PMT medium borderline
Cpep07G0004000.1 Alkaloid PMT low borderline
Cpep08G0002550.1 Alkaloid PMT medium pass
Cpep09G0000340.1 Alkaloid PMT medium borderline
Cpep09G0004970.1 Alkaloid PMT medium borderline
Cpep11G0003550.1 Alkaloid PMT medium pass
Cpep11G0011830.1 Alkaloid PMT medium pass
Cpep12G0007790.1 Alkaloid PMT low borderline
Cpep18G0008370.1 Alkaloid PMT medium borderline
Cpep18G0009190.1 Alkaloid PMT medium pass
Cpep20G0002300.1 Alkaloid PMT medium borderline