Cucurbita pepo (cucurbita_pepo)
Imported from atlas release summary for Cucurbita pepo.
828
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
828
Candidate Genes
BAHD
7.67%
C4H
5.96%
POD
4.81%
C3'H/CYP98A
4.43%
4CL
4.09%
F3H
3.66%
NMT
3.62%
UGT
3.07%
Other Families
62.69%
More Families (93)
CYP76
71
3.02%
IFS
68
2.9%
7DLGT
58
2.47%
STR
56
2.39%
CODM/T6ODM
55
2.34%
T3O
51
2.17%
SMT1/SMT2/SMT3
47
2.0%
H6H
37
1.58%
F3'H/CYP75B
37
1.58%
UFGT
35
1.49%
DWF4/CYP90B1
33
1.41%
IFR
30
1.28%
CSE
30
1.28%
CAS
30
1.28%
BR6OX2/CYP85A2
29
1.24%
PYKS
28
1.19%
HCT
28
1.19%
CAD
27
1.15%
FNS
26
1.11%
T16H
25
1.06%
TAT
25
1.06%
NCS
24
1.02%
GS
23
0.98%
G8O/G8H
23
0.98%
RAS
23
0.98%
CYP71
23
0.98%
SGD
20
0.85%
CCR
20
0.85%
8HGO
19
0.81%
ANR
18
0.77%
CYP90D1
18
0.77%
TRI/TRII
17
0.72%
PMT
16
0.68%
ANS/LDOX
16
0.68%
COMT
16
0.68%
SLS
15
0.64%
DFR
15
0.64%
16OMT
14
0.6%
TPS
14
0.6%
GES
13
0.55%
IO
13
0.55%
F3'5'H/CYP75A
13
0.55%
F5H/CYP84A
13
0.55%
LAC
13
0.55%
CNMT
12
0.51%
BR6OX1/CYP85A1
12
0.51%
CYP719
10
0.43%
CPR
10
0.43%
CPD/CYP90A1
10
0.43%
CHS
9
0.38%
AACT
9
0.38%
CYP80B1
8
0.34%
COR
8
0.34%
SQS/FDFT1
8
0.34%
ROT3/CYP90C1
8
0.34%
DXS
8
0.34%
HPPR
7
0.3%
SMO1/SMO2
7
0.3%
7DLH
6
0.26%
CYP51G1
6
0.26%
SQE
6
0.26%
FPPS
6
0.26%
LAMT
5
0.21%
MPO
5
0.21%
CCoAOMT
5
0.21%
GGPPS
5
0.21%
MVD
5
0.21%
PMK
5
0.21%
MVK
5
0.21%
HMGR
5
0.21%
ISY
4
0.17%
DWF1
4
0.17%
DET2
4
0.17%
IDI
4
0.17%
TYDC_DDC
3
0.13%
CHI
3
0.13%
HDS/IspG
3
0.13%
MDS/IspF
3
0.13%
HDR/IspH
3
0.13%
TDC
2
0.09%
ADC
2
0.09%
ODC
2
0.09%
XMT_MXMT_DXMT
2
0.09%
6OMT_4OMT_SOMT
2
0.09%
HYD1
2
0.09%
DWF7
2
0.09%
FK
2
0.09%
CPI1
2
0.09%
HMGS
2
0.09%
MCT/IspD
2
0.09%
DXR
2
0.09%
DWF5
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 259 | 19 | BAHD (123) | View species results |
| Phenylpropanoid pathway | 187 | 11 | POD (93) | View species results |
| Alkaloid pathway | 177 | 22 | NMT (36) | View species results |
| Flavonoid pathway | 73 | 9 | UFGT (29) | View species results |
| Steroid pathway | 70 | 11 | CAS (24) | View species results |
| Rosmarinic acid pathway | 62 | 6 | 4CL (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 736 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 231 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cpep12G0001260.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Cpep12G0002750.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Cpep12G0004600.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Cpep12G0011730.1 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Cpep13G0000170.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Cpep13G0001590.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Cpep13G0003210.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Cpep13G0005070.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Cpep13G0005850.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Cpep13G0006430.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Cpep13G0006920.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Cpep14G0000440.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Cpep14G0005350.1 | Alkaloid | NMT | medium | borderline | NMT__00010__sp_A4GE70_DXMT1_COFCA |
| Cpep14G0007400.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Cpep14G0009140.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Cpep14G0010320.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Cpep15G0007630.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Cpep16G0000780.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Cpep16G0001240.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Cpep16G0001690.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Cpep16G0004530.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Cpep16G0004970.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Cpep16G0005110.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Cpep17G0000250.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Cpep17G0010040.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Cpep17G0010320.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Cpep18G0003730.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Cpep18G0004710.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Cpep18G0005850.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Cpep19G0002220.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Cpep19G0005830.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Cpep19G0008650.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Cpep19G0011830.1 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| Cpep20G0001510.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Cpep20G0006830.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |