Cucurbita pepo (cucurbita_pepo)
Imported from atlas release summary for Cucurbita pepo.
828
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
828
Candidate Genes
BAHD
7.67%
C4H
5.96%
POD
4.81%
C3'H/CYP98A
4.43%
4CL
4.09%
F3H
3.66%
NMT
3.62%
UGT
3.07%
Other Families
62.69%
More Families (93)
CYP76
71
3.02%
IFS
68
2.9%
7DLGT
58
2.47%
STR
56
2.39%
CODM/T6ODM
55
2.34%
T3O
51
2.17%
SMT1/SMT2/SMT3
47
2.0%
H6H
37
1.58%
F3'H/CYP75B
37
1.58%
UFGT
35
1.49%
DWF4/CYP90B1
33
1.41%
IFR
30
1.28%
CSE
30
1.28%
CAS
30
1.28%
BR6OX2/CYP85A2
29
1.24%
PYKS
28
1.19%
HCT
28
1.19%
CAD
27
1.15%
FNS
26
1.11%
T16H
25
1.06%
TAT
25
1.06%
NCS
24
1.02%
GS
23
0.98%
G8O/G8H
23
0.98%
RAS
23
0.98%
CYP71
23
0.98%
SGD
20
0.85%
CCR
20
0.85%
8HGO
19
0.81%
ANR
18
0.77%
CYP90D1
18
0.77%
TRI/TRII
17
0.72%
PMT
16
0.68%
ANS/LDOX
16
0.68%
COMT
16
0.68%
SLS
15
0.64%
DFR
15
0.64%
16OMT
14
0.6%
TPS
14
0.6%
GES
13
0.55%
IO
13
0.55%
F3'5'H/CYP75A
13
0.55%
F5H/CYP84A
13
0.55%
LAC
13
0.55%
CNMT
12
0.51%
BR6OX1/CYP85A1
12
0.51%
CYP719
10
0.43%
CPR
10
0.43%
CPD/CYP90A1
10
0.43%
CHS
9
0.38%
AACT
9
0.38%
CYP80B1
8
0.34%
COR
8
0.34%
SQS/FDFT1
8
0.34%
ROT3/CYP90C1
8
0.34%
DXS
8
0.34%
HPPR
7
0.3%
SMO1/SMO2
7
0.3%
7DLH
6
0.26%
CYP51G1
6
0.26%
SQE
6
0.26%
FPPS
6
0.26%
LAMT
5
0.21%
MPO
5
0.21%
CCoAOMT
5
0.21%
GGPPS
5
0.21%
MVD
5
0.21%
PMK
5
0.21%
MVK
5
0.21%
HMGR
5
0.21%
ISY
4
0.17%
DWF1
4
0.17%
DET2
4
0.17%
IDI
4
0.17%
TYDC_DDC
3
0.13%
CHI
3
0.13%
HDS/IspG
3
0.13%
MDS/IspF
3
0.13%
HDR/IspH
3
0.13%
TDC
2
0.09%
ADC
2
0.09%
ODC
2
0.09%
XMT_MXMT_DXMT
2
0.09%
6OMT_4OMT_SOMT
2
0.09%
HYD1
2
0.09%
DWF7
2
0.09%
FK
2
0.09%
CPI1
2
0.09%
HMGS
2
0.09%
MCT/IspD
2
0.09%
DXR
2
0.09%
DWF5
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 259 | 19 | BAHD (123) | View species results |
| Phenylpropanoid pathway | 187 | 11 | POD (93) | View species results |
| Alkaloid pathway | 177 | 22 | NMT (36) | View species results |
| Flavonoid pathway | 73 | 9 | UFGT (29) | View species results |
| Steroid pathway | 70 | 11 | CAS (24) | View species results |
| Rosmarinic acid pathway | 62 | 6 | 4CL (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 736 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 231 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cpep00G0004830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep00G0007260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep00G0008210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep01G0005450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep01G0013080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep01G0013750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep01G0019040.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cpep01G0022300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep01G0022740.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep02G0009100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep02G0013230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep02G0016690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep03G0001450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep03G0003330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep03G0004080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep03G0004550.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cpep03G0010970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep03G0011200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep03G0012750.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cpep05G0004890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep05G0009660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep06G0009030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep07G0009910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep08G0009450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep08G0012980.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cpep08G0013350.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cpep09G0000570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep09G0003400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep09G0011090.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep10G0002270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep10G0002690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep10G0011990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep11G0003790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep11G0005840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep11G0010960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep13G0000260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep13G0004730.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cpep13G0007910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep13G0008300.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep14G0000740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep14G0003740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep14G0004250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep14G0006870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep14G0007760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep15G0008410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep16G0000910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep16G0001760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep16G0006560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep16G0008570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cpep16G0008730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |