Cucurbita pepo (cucurbita_pepo)
Imported from atlas release summary for Cucurbita pepo.
1330
Candidate Protein Records
828
Pathway-Level Records
2348
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2348
Family-Level Calls
BAHD
7.67%
C4H
5.96%
POD
4.81%
C3'H/CYP98A
4.43%
4CL
4.09%
F3H
3.66%
NMT
3.62%
UGT
3.07%
Other Families
62.69%
More Families (93)
CYP76
71
3.02%
IFS
68
2.9%
7DLGT
58
2.47%
STR
56
2.39%
CODM/T6ODM
55
2.34%
T3O
51
2.17%
SMT1/SMT2/SMT3
47
2.0%
H6H
37
1.58%
F3'H/CYP75B
37
1.58%
UFGT
35
1.49%
DWF4/CYP90B1
33
1.41%
IFR
30
1.28%
CSE
30
1.28%
CAS
30
1.28%
BR6OX2/CYP85A2
29
1.24%
PYKS
28
1.19%
HCT
28
1.19%
CAD
27
1.15%
FNS
26
1.11%
T16H
25
1.06%
TAT
25
1.06%
NCS
24
1.02%
GS
23
0.98%
G8O/G8H
23
0.98%
RAS
23
0.98%
CYP71
23
0.98%
SGD
20
0.85%
CCR
20
0.85%
8HGO
19
0.81%
ANR
18
0.77%
CYP90D1
18
0.77%
TRI/TRII
17
0.72%
PMT
16
0.68%
ANS/LDOX
16
0.68%
COMT
16
0.68%
SLS
15
0.64%
DFR
15
0.64%
16OMT
14
0.6%
TPS
14
0.6%
GES
13
0.55%
IO
13
0.55%
F3'5'H/CYP75A
13
0.55%
F5H/CYP84A
13
0.55%
LAC
13
0.55%
CNMT
12
0.51%
BR6OX1/CYP85A1
12
0.51%
CYP719
10
0.43%
CPR
10
0.43%
CPD/CYP90A1
10
0.43%
CHS
9
0.38%
AACT
9
0.38%
CYP80B1
8
0.34%
COR
8
0.34%
SQS/FDFT1
8
0.34%
ROT3/CYP90C1
8
0.34%
DXS
8
0.34%
HPPR
7
0.3%
SMO1/SMO2
7
0.3%
7DLH
6
0.26%
CYP51G1
6
0.26%
SQE
6
0.26%
FPPS
6
0.26%
LAMT
5
0.21%
MPO
5
0.21%
CCoAOMT
5
0.21%
GGPPS
5
0.21%
MVD
5
0.21%
PMK
5
0.21%
MVK
5
0.21%
HMGR
5
0.21%
ISY
4
0.17%
DWF1
4
0.17%
DET2
4
0.17%
IDI
4
0.17%
TYDC_DDC
3
0.13%
CHI
3
0.13%
HDS/IspG
3
0.13%
MDS/IspF
3
0.13%
HDR/IspH
3
0.13%
TDC
2
0.09%
ADC
2
0.09%
ODC
2
0.09%
XMT_MXMT_DXMT
2
0.09%
6OMT_4OMT_SOMT
2
0.09%
HYD1
2
0.09%
DWF7
2
0.09%
FK
2
0.09%
CPI1
2
0.09%
HMGS
2
0.09%
MCT/IspD
2
0.09%
DXR
2
0.09%
DWF5
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 259 | 19 | BAHD (123) | View species results |
| Phenylpropanoid pathway | 187 | 11 | POD (93) | View species results |
| Alkaloid pathway | 177 | 22 | NMT (36) | View species results |
| Flavonoid pathway | 73 | 9 | UFGT (29) | View species results |
| Steroid pathway | 70 | 11 | CAS (24) | View species results |
| Rosmarinic acid pathway | 62 | 6 | 4CL (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 736 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 231 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cpep04G0011290.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Cpep08G0011740.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Cpep13G0007320.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Cpep14G0001530.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cpep14G0005050.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Cpep15G0008980.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cpep18G0000670.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cpep19G0001900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cpep09G0007400.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Cpep15G0001080.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Cpep20G0005470.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Cpep10G0006280.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00002__sp_A0A0S2PM92_TCS1F_CAMCR |
| Cpep10G0006290.1 | Alkaloid | XMT_MXMT_DXMT | low | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |