Cymbidium goeringii (cymbidium_goeringii)
Imported from atlas release summary for Cymbidium goeringii.
1504
Candidate Protein Records
1262
Pathway-Level Records
2994
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2994
Family-Level Calls
C4H
5.88%
BAHD
5.48%
C3'H/CYP98A
5.41%
4CL
4.31%
UGT
4.01%
POD
3.87%
7DLGT
3.34%
IFS
3.27%
Other Families
64.43%
More Families (95)
UFGT
93
3.11%
CYP76
93
3.11%
T3O
87
2.91%
F3H
84
2.81%
TPS
74
2.47%
DWF4/CYP90B1
72
2.4%
NMT
70
2.34%
CAD
63
2.1%
F3'H/CYP75B
61
2.04%
CAS
59
1.97%
STR
53
1.77%
GES
51
1.7%
SMT1/SMT2/SMT3
49
1.64%
H6H
48
1.6%
IFR
42
1.4%
TRI/TRII
40
1.34%
CYP71
40
1.34%
CODM/T6ODM
39
1.3%
CYP90D1
36
1.2%
BR6OX2/CYP85A2
34
1.14%
SGD
31
1.04%
LAC
30
1.0%
CSE
29
0.97%
GS
28
0.94%
T16H
28
0.94%
COMT
28
0.94%
PYKS
27
0.9%
G8O/G8H
25
0.84%
8HGO
22
0.73%
SLS
21
0.7%
BR6OX1/CYP85A1
21
0.7%
NCS
20
0.67%
CCR
20
0.67%
DFR
19
0.63%
IO
18
0.6%
ANR
18
0.6%
16OMT
16
0.53%
F3'5'H/CYP75A
15
0.5%
PAL
15
0.5%
RAS
15
0.5%
ROT3/CYP90C1
15
0.5%
CYP51G1
15
0.5%
BBE
14
0.47%
CCoAOMT
14
0.47%
PMT
13
0.43%
FNS
13
0.43%
HCT
12
0.4%
CNMT
11
0.37%
F5H/CYP84A
11
0.37%
COR
10
0.33%
CHS
9
0.3%
SQE
9
0.3%
MPO
8
0.27%
CYP719
8
0.27%
ANS/LDOX
8
0.27%
7DLH
7
0.23%
CPD/CYP90A1
7
0.23%
CPR
6
0.2%
DET2
6
0.2%
MVD
6
0.2%
TDC
5
0.17%
TAT
5
0.17%
GGPPS
5
0.17%
FPPS
5
0.17%
CYP80B1
4
0.13%
ADC
4
0.13%
LAMT
4
0.13%
HPPR
4
0.13%
SQS/FDFT1
4
0.13%
MVK
4
0.13%
AACT
4
0.13%
PMK
4
0.13%
HMGR
4
0.13%
CHI
3
0.1%
SMO1/SMO2
3
0.1%
IDI
3
0.1%
DXS
3
0.1%
ISY
2
0.07%
XMT_MXMT_DXMT
2
0.07%
TYDC_DDC
2
0.07%
FLS
2
0.07%
HDR/IspH
2
0.07%
CMK/IspE
2
0.07%
MDS/IspF
2
0.07%
CYP80F1
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
DWF1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
DWF7
1
0.03%
MCT/IspD
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 384 | 19 | BAHD (129) | View species results |
| Alkaloid pathway | 279 | 18 | 7DLGT (47) | View species results |
| Phenylpropanoid pathway | 258 | 13 | POD (93) | View species results |
| Flavonoid pathway | 173 | 13 | UFGT (87) | View species results |
| Steroid pathway | 87 | 11 | CAS (40) | View species results |
| Rosmarinic acid pathway | 81 | 7 | 4CL (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1055 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 191 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| cymbidium_goeringii_gene_2440 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_gene_2441 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_gene_2708 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_gene_2726 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_gene_5300 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_gene_5543 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_gene_5938 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_gene_6130 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_gene_6146 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_gene_7949 | Alkaloid | GES | low | borderline |
| cymbidium_goeringii_gene_9083 | Alkaloid | GES | low | borderline |
| cymbidium_goeringii_gene_9708 | Alkaloid | GES | medium | pass |
| cymbidium_goeringii_g17089 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g17096 | Alkaloid | GS | high | pass |
| cymbidium_goeringii_g19631 | Alkaloid | GS | medium | pass |
| cymbidium_goeringii_g29142 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g38070 | Alkaloid | GS | medium | pass |
| cymbidium_goeringii_g43870 | Alkaloid | GS | medium | pass |
| cymbidium_goeringii_g44555 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g4470 | Alkaloid | GS | high | pass |
| cymbidium_goeringii_g44809 | Alkaloid | GS | medium | pass |
| cymbidium_goeringii_g46198 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g52050 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g54834 | Alkaloid | GS | medium | pass |
| cymbidium_goeringii_g58164 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g59876 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g59879 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g59883 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g62703 | Alkaloid | GS | high | pass |
| cymbidium_goeringii_g62704 | Alkaloid | GS | high | pass |
| cymbidium_goeringii_g68100 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_g69590 | Alkaloid | GS | high | pass |
| cymbidium_goeringii_g7132 | Alkaloid | GS | high | pass |
| cymbidium_goeringii_g7319 | Alkaloid | GS | medium | pass |
| cymbidium_goeringii_g9236 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_gene_1034 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_gene_14259 | Alkaloid | GS | high | pass |
| cymbidium_goeringii_gene_2211 | Alkaloid | GS | low | borderline |
| cymbidium_goeringii_gene_2392 | Alkaloid | GS | high | pass |
| cymbidium_goeringii_gene_6149 | Alkaloid | GS | high | pass |
| cymbidium_goeringii_g10526 | Alkaloid | H6H | low | borderline |
| cymbidium_goeringii_g1659 | Alkaloid | H6H | medium | borderline |
| cymbidium_goeringii_g1667 | Alkaloid | H6H | medium | borderline |
| cymbidium_goeringii_g18180 | Alkaloid | H6H | medium | borderline |
| cymbidium_goeringii_g23420 | Alkaloid | H6H | low | borderline |
| cymbidium_goeringii_g26408 | Alkaloid | H6H | low | borderline |
| cymbidium_goeringii_g32706 | Alkaloid | H6H | low | borderline |
| cymbidium_goeringii_g3529 | Alkaloid | H6H | medium | borderline |
| cymbidium_goeringii_g43311 | Alkaloid | H6H | low | borderline |
| cymbidium_goeringii_g45353 | Alkaloid | H6H | medium | borderline |