PlantSME Plant secondary metabolism enzyme database

Dendrobium nobile (dendrobium_nobile)

Imported from atlas release summary for Dendrobium nobile.

1248
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.93% Alkaloid pathway 23.16% Phenylpropanoid pathway 18.19% Flavonoid pathway 14.1% Rosmarinic acid pathway 9.05% Steroid pathway 6.57%
Family Distribution
C4H 6.85% C3'H/CYP98A 6.04% BAHD 5.07% UGT 4.26% 7DLGT 3.97% UFGT 3.84% T3O 3.81% 4CL 3.68%
Other Families 62.46%
More Families (94)
IFS 107 3.46% POD 98 3.17% CYP76 97 3.13% F3H 86 2.78% DWF4/CYP90B1 83 2.68% F3'H/CYP75B 76 2.46% CYP71 70 2.26% STR 69 2.23% NMT 68 2.2% CAD 62 2.0% SMT1/SMT2/SMT3 52 1.68% BR6OX2/CYP85A2 51 1.65% TPS 50 1.62% CAS 49 1.58% GES 47 1.52% CODM/T6ODM 41 1.32% H6H 38 1.23% IFR 38 1.23% CYP90D1 36 1.16% G8O/G8H 34 1.1% GS 31 1.0% SLS 31 1.0% TRI/TRII 30 0.97% PYKS 29 0.94% LAC 27 0.87% CSE 26 0.84% NCS 23 0.74% SGD 23 0.74% T16H 23 0.74% FNS 23 0.74% RAS 22 0.71% CCR 20 0.65% ANR 17 0.55% F5H/CYP84A 17 0.55% CYP51G1 17 0.55% HCT 16 0.52% COMT 13 0.42% ROT3/CYP90C1 13 0.42% PMT 12 0.39% IO 12 0.39% 8HGO 11 0.36% CHS 11 0.36% LAMT 10 0.32% F3'5'H/CYP75A 10 0.32% CCoAOMT 10 0.32% MVD 9 0.29% BBE 8 0.26% 7DLH 8 0.26% 16OMT 8 0.26% COR 8 0.26% DFR 8 0.26% ANS/LDOX 8 0.26% TAT 8 0.26% BR6OX1/CYP85A1 8 0.26% CNMT 7 0.23% MPO 7 0.23% CPR 7 0.23% SQS/FDFT1 7 0.23% DET2 7 0.23% GGPPS 7 0.23% TYDC_DDC 6 0.19% PAL 6 0.19% FPPS 6 0.19% CPD/CYP90A1 5 0.16% CYP719 4 0.13% ISY 4 0.13% DWF1 4 0.13% HMGR 4 0.13% DXS 4 0.13% AACT 4 0.13% ADC 3 0.1% CHI 3 0.1% HPPR 3 0.1% HYD1 3 0.1% IDI 3 0.1% MVK 3 0.1% SQE 2 0.06% SMO1/SMO2 2 0.06% DWF5 2 0.06% MCT/IspD 2 0.06% PMK 2 0.06% HMGS 2 0.06% TDC 1 0.03% XMT_MXMT_DXMT 1 0.03% CYP80B1 1 0.03% ODC 1 0.03% CPI1 1 0.03% FK 1 0.03% DWF7 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% HDR/IspH 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 361 19 UGT (128) View species results
Alkaloid pathway 289 19 7DLGT (52) View species results
Phenylpropanoid pathway 227 11 POD (91) View species results
Flavonoid pathway 176 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (57) View species results
Steroid pathway 82 15 SMT1/SMT2/SMT3 (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1220 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 195 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
KAI0510492.1 Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
KAI0511165.1 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
KAI0511540.1 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
KAI0511723.1 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
KAI0512426.1 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
KAI0513812.1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
KAI0518635.1 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
KAI0525292.1 Rosmarinic Acid 4CL low borderline 4CL__00008__sp_Q42982_4CL2_ORYSJ
KAI0527148.1 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
KAI0528583.1 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
KAI0528770.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
KAI0528882.1 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
KAI0529434.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
KAI0530677.1 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH