PlantSME Plant secondary metabolism enzyme database

Dendrobium nobile (dendrobium_nobile)

Imported from atlas release summary for Dendrobium nobile.

1248
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.93% Alkaloid pathway 23.16% Phenylpropanoid pathway 18.19% Flavonoid pathway 14.1% Rosmarinic acid pathway 9.05% Steroid pathway 6.57%
Family Distribution
C4H 6.85% C3'H/CYP98A 6.04% BAHD 5.07% UGT 4.26% 7DLGT 3.97% UFGT 3.84% T3O 3.81% 4CL 3.68%
Other Families 62.46%
More Families (94)
IFS 107 3.46% POD 98 3.17% CYP76 97 3.13% F3H 86 2.78% DWF4/CYP90B1 83 2.68% F3'H/CYP75B 76 2.46% CYP71 70 2.26% STR 69 2.23% NMT 68 2.2% CAD 62 2.0% SMT1/SMT2/SMT3 52 1.68% BR6OX2/CYP85A2 51 1.65% TPS 50 1.62% CAS 49 1.58% GES 47 1.52% CODM/T6ODM 41 1.32% H6H 38 1.23% IFR 38 1.23% CYP90D1 36 1.16% G8O/G8H 34 1.1% GS 31 1.0% SLS 31 1.0% TRI/TRII 30 0.97% PYKS 29 0.94% LAC 27 0.87% CSE 26 0.84% NCS 23 0.74% SGD 23 0.74% T16H 23 0.74% FNS 23 0.74% RAS 22 0.71% CCR 20 0.65% ANR 17 0.55% F5H/CYP84A 17 0.55% CYP51G1 17 0.55% HCT 16 0.52% COMT 13 0.42% ROT3/CYP90C1 13 0.42% PMT 12 0.39% IO 12 0.39% 8HGO 11 0.36% CHS 11 0.36% LAMT 10 0.32% F3'5'H/CYP75A 10 0.32% CCoAOMT 10 0.32% MVD 9 0.29% BBE 8 0.26% 7DLH 8 0.26% 16OMT 8 0.26% COR 8 0.26% DFR 8 0.26% ANS/LDOX 8 0.26% TAT 8 0.26% BR6OX1/CYP85A1 8 0.26% CNMT 7 0.23% MPO 7 0.23% CPR 7 0.23% SQS/FDFT1 7 0.23% DET2 7 0.23% GGPPS 7 0.23% TYDC_DDC 6 0.19% PAL 6 0.19% FPPS 6 0.19% CPD/CYP90A1 5 0.16% CYP719 4 0.13% ISY 4 0.13% DWF1 4 0.13% HMGR 4 0.13% DXS 4 0.13% AACT 4 0.13% ADC 3 0.1% CHI 3 0.1% HPPR 3 0.1% HYD1 3 0.1% IDI 3 0.1% MVK 3 0.1% SQE 2 0.06% SMO1/SMO2 2 0.06% DWF5 2 0.06% MCT/IspD 2 0.06% PMK 2 0.06% HMGS 2 0.06% TDC 1 0.03% XMT_MXMT_DXMT 1 0.03% CYP80B1 1 0.03% ODC 1 0.03% CPI1 1 0.03% FK 1 0.03% DWF7 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% HDR/IspH 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 361 19 UGT (128) View species results
Alkaloid pathway 289 19 7DLGT (52) View species results
Phenylpropanoid pathway 227 11 POD (91) View species results
Flavonoid pathway 176 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (57) View species results
Steroid pathway 82 15 SMT1/SMT2/SMT3 (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1220 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 195 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HPPR
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Gene Pathway Family Confidence Status Best Target
KAI0488100.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
KAI0493877.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
KAI0513370.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU