Dendrobium nobile (dendrobium_nobile)
Imported from atlas release summary for Dendrobium nobile.
1248
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1248
Candidate Genes
C4H
6.85%
C3'H/CYP98A
6.04%
BAHD
5.07%
UGT
4.26%
7DLGT
3.97%
UFGT
3.84%
T3O
3.81%
4CL
3.68%
Other Families
62.46%
More Families (94)
IFS
107
3.46%
POD
98
3.17%
CYP76
97
3.13%
F3H
86
2.78%
DWF4/CYP90B1
83
2.68%
F3'H/CYP75B
76
2.46%
CYP71
70
2.26%
STR
69
2.23%
NMT
68
2.2%
CAD
62
2.0%
SMT1/SMT2/SMT3
52
1.68%
BR6OX2/CYP85A2
51
1.65%
TPS
50
1.62%
CAS
49
1.58%
GES
47
1.52%
CODM/T6ODM
41
1.32%
H6H
38
1.23%
IFR
38
1.23%
CYP90D1
36
1.16%
G8O/G8H
34
1.1%
GS
31
1.0%
SLS
31
1.0%
TRI/TRII
30
0.97%
PYKS
29
0.94%
LAC
27
0.87%
CSE
26
0.84%
NCS
23
0.74%
SGD
23
0.74%
T16H
23
0.74%
FNS
23
0.74%
RAS
22
0.71%
CCR
20
0.65%
ANR
17
0.55%
F5H/CYP84A
17
0.55%
CYP51G1
17
0.55%
HCT
16
0.52%
COMT
13
0.42%
ROT3/CYP90C1
13
0.42%
PMT
12
0.39%
IO
12
0.39%
8HGO
11
0.36%
CHS
11
0.36%
LAMT
10
0.32%
F3'5'H/CYP75A
10
0.32%
CCoAOMT
10
0.32%
MVD
9
0.29%
BBE
8
0.26%
7DLH
8
0.26%
16OMT
8
0.26%
COR
8
0.26%
DFR
8
0.26%
ANS/LDOX
8
0.26%
TAT
8
0.26%
BR6OX1/CYP85A1
8
0.26%
CNMT
7
0.23%
MPO
7
0.23%
CPR
7
0.23%
SQS/FDFT1
7
0.23%
DET2
7
0.23%
GGPPS
7
0.23%
TYDC_DDC
6
0.19%
PAL
6
0.19%
FPPS
6
0.19%
CPD/CYP90A1
5
0.16%
CYP719
4
0.13%
ISY
4
0.13%
DWF1
4
0.13%
HMGR
4
0.13%
DXS
4
0.13%
AACT
4
0.13%
ADC
3
0.1%
CHI
3
0.1%
HPPR
3
0.1%
HYD1
3
0.1%
IDI
3
0.1%
MVK
3
0.1%
SQE
2
0.06%
SMO1/SMO2
2
0.06%
DWF5
2
0.06%
MCT/IspD
2
0.06%
PMK
2
0.06%
HMGS
2
0.06%
TDC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
CYP80B1
1
0.03%
ODC
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
DWF7
1
0.03%
CMK/IspE
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 361 | 19 | UGT (128) | View species results |
| Alkaloid pathway | 289 | 19 | 7DLGT (52) | View species results |
| Phenylpropanoid pathway | 227 | 11 | POD (91) | View species results |
| Flavonoid pathway | 176 | 9 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 113 | 7 | C4H (57) | View species results |
| Steroid pathway | 82 | 15 | SMT1/SMT2/SMT3 (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1220 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 195 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| KAI0488383.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| KAI0488900.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| KAI0489457.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| KAI0491653.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| KAI0492617.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| KAI0493122.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| KAI0493376.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| KAI0494483.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| KAI0495166.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| KAI0496070.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| KAI0496310.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| KAI0496311.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| KAI0496368.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| KAI0496371.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| KAI0497546.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| KAI0498235.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| KAI0499257.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| KAI0499307.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| KAI0499362.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| KAI0499446.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| KAI0499481.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| KAI0499926.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| KAI0499928.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| KAI0499931.1 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| KAI0500475.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| KAI0500505.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| KAI0500585.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| KAI0502269.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| KAI0502436.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| KAI0503899.1 | Alkaloid | NMT | low | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| KAI0503905.1 | Alkaloid | NMT | low | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| KAI0503946.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| KAI0504281.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| KAI0504591.1 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| KAI0504592.1 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| KAI0504710.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| KAI0507483.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| KAI0507736.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| KAI0508083.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| KAI0510018.1 | Alkaloid | NMT | medium | borderline | NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ |
| KAI0510136.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| KAI0511533.1 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| KAI0511716.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| KAI0511717.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| KAI0511847.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| KAI0513633.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| KAI0513858.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| KAI0513894.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| KAI0513909.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| KAI0513998.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |