Dendrobium nobile (dendrobium_nobile)
Imported from atlas release summary for Dendrobium nobile.
1248
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1248
Candidate Genes
C4H
6.85%
C3'H/CYP98A
6.04%
BAHD
5.07%
UGT
4.26%
7DLGT
3.97%
UFGT
3.84%
T3O
3.81%
4CL
3.68%
Other Families
62.46%
More Families (94)
IFS
107
3.46%
POD
98
3.17%
CYP76
97
3.13%
F3H
86
2.78%
DWF4/CYP90B1
83
2.68%
F3'H/CYP75B
76
2.46%
CYP71
70
2.26%
STR
69
2.23%
NMT
68
2.2%
CAD
62
2.0%
SMT1/SMT2/SMT3
52
1.68%
BR6OX2/CYP85A2
51
1.65%
TPS
50
1.62%
CAS
49
1.58%
GES
47
1.52%
CODM/T6ODM
41
1.32%
H6H
38
1.23%
IFR
38
1.23%
CYP90D1
36
1.16%
G8O/G8H
34
1.1%
GS
31
1.0%
SLS
31
1.0%
TRI/TRII
30
0.97%
PYKS
29
0.94%
LAC
27
0.87%
CSE
26
0.84%
NCS
23
0.74%
SGD
23
0.74%
T16H
23
0.74%
FNS
23
0.74%
RAS
22
0.71%
CCR
20
0.65%
ANR
17
0.55%
F5H/CYP84A
17
0.55%
CYP51G1
17
0.55%
HCT
16
0.52%
COMT
13
0.42%
ROT3/CYP90C1
13
0.42%
PMT
12
0.39%
IO
12
0.39%
8HGO
11
0.36%
CHS
11
0.36%
LAMT
10
0.32%
F3'5'H/CYP75A
10
0.32%
CCoAOMT
10
0.32%
MVD
9
0.29%
BBE
8
0.26%
7DLH
8
0.26%
16OMT
8
0.26%
COR
8
0.26%
DFR
8
0.26%
ANS/LDOX
8
0.26%
TAT
8
0.26%
BR6OX1/CYP85A1
8
0.26%
CNMT
7
0.23%
MPO
7
0.23%
CPR
7
0.23%
SQS/FDFT1
7
0.23%
DET2
7
0.23%
GGPPS
7
0.23%
TYDC_DDC
6
0.19%
PAL
6
0.19%
FPPS
6
0.19%
CPD/CYP90A1
5
0.16%
CYP719
4
0.13%
ISY
4
0.13%
DWF1
4
0.13%
HMGR
4
0.13%
DXS
4
0.13%
AACT
4
0.13%
ADC
3
0.1%
CHI
3
0.1%
HPPR
3
0.1%
HYD1
3
0.1%
IDI
3
0.1%
MVK
3
0.1%
SQE
2
0.06%
SMO1/SMO2
2
0.06%
DWF5
2
0.06%
MCT/IspD
2
0.06%
PMK
2
0.06%
HMGS
2
0.06%
TDC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
CYP80B1
1
0.03%
ODC
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
DWF7
1
0.03%
CMK/IspE
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 361 | 19 | UGT (128) | View species results |
| Alkaloid pathway | 289 | 19 | 7DLGT (52) | View species results |
| Phenylpropanoid pathway | 227 | 11 | POD (91) | View species results |
| Flavonoid pathway | 176 | 9 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 113 | 7 | C4H (57) | View species results |
| Steroid pathway | 82 | 15 | SMT1/SMT2/SMT3 (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1220 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 195 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| KAI0487843.1 | Alkaloid | PYKS | low | borderline |
| KAI0491676.1 | Alkaloid | PYKS | low | borderline |
| KAI0491820.1 | Alkaloid | PYKS | low | borderline |
| KAI0492285.1 | Alkaloid | PYKS | high | pass |
| KAI0492286.1 | Alkaloid | PYKS | high | pass |
| KAI0492869.1 | Alkaloid | PYKS | high | pass |
| KAI0492870.1 | Alkaloid | PYKS | medium | pass |
| KAI0492871.1 | Alkaloid | PYKS | high | pass |
| KAI0492873.1 | Alkaloid | PYKS | high | pass |
| KAI0492874.1 | Alkaloid | PYKS | high | pass |
| KAI0492877.1 | Alkaloid | PYKS | low | borderline |
| KAI0492986.1 | Alkaloid | PYKS | low | borderline |
| KAI0493502.1 | Alkaloid | PYKS | low | borderline |
| KAI0493833.1 | Alkaloid | PYKS | low | borderline |
| KAI0498137.1 | Alkaloid | PYKS | high | pass |
| KAI0499209.1 | Alkaloid | PYKS | low | borderline |
| KAI0499379.1 | Alkaloid | PYKS | high | pass |
| KAI0501832.1 | Alkaloid | PYKS | low | borderline |
| KAI0507376.1 | Alkaloid | PYKS | low | borderline |
| KAI0513507.1 | Alkaloid | PYKS | high | pass |
| KAI0516307.1 | Alkaloid | PYKS | low | borderline |
| KAI0518633.1 | Alkaloid | PYKS | low | borderline |
| KAI0522437.1 | Alkaloid | PYKS | low | borderline |
| KAI0522746.1 | Alkaloid | PYKS | high | pass |
| KAI0523305.1 | Alkaloid | PYKS | low | borderline |
| KAI0524678.1 | Alkaloid | PYKS | low | borderline |
| KAI0524855.1 | Alkaloid | PYKS | low | borderline |
| KAI0524890.1 | Alkaloid | PYKS | low | borderline |
| KAI0524893.1 | Alkaloid | PYKS | low | borderline |