Fossombronia (fossombronia)
Imported from atlas release summary for Fossombronia.
715
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
715
Candidate Genes
C4H
8.84%
C3'H/CYP98A
6.28%
BAHD
5.54%
CYP76
5.12%
4CL
4.05%
POD
3.82%
IFS
3.77%
T3O
3.07%
Other Families
59.52%
More Families (95)
BR6OX2/CYP85A2
59
2.75%
F3H
54
2.51%
DWF4/CYP90B1
54
2.51%
STR
52
2.42%
NMT
49
2.28%
PAL
42
1.95%
F3'H/CYP75B
35
1.63%
GS
33
1.54%
CSE
33
1.54%
RAS
32
1.49%
IFR
30
1.4%
TRI/TRII
29
1.35%
G8O/G8H
29
1.35%
H6H
29
1.35%
CODM/T6ODM
28
1.3%
F3'5'H/CYP75A
27
1.26%
HCT
27
1.26%
SMT1/SMT2/SMT3
27
1.26%
IO
26
1.21%
T16H
26
1.21%
CAD
25
1.16%
PYKS
23
1.07%
CAS
20
0.93%
UGT
19
0.88%
LAC
18
0.84%
LAMT
17
0.79%
BR6OX1/CYP85A1
17
0.79%
CYP71
17
0.79%
UFGT
15
0.7%
TPS
15
0.7%
7DLGT
14
0.65%
CHS
14
0.65%
COMT
14
0.65%
CPD/CYP90A1
14
0.65%
CYP719
13
0.6%
FNS
13
0.6%
NCS
12
0.56%
GES
11
0.51%
ANS/LDOX
11
0.51%
ANR
11
0.51%
TAT
11
0.51%
ROT3/CYP90C1
11
0.51%
COR
10
0.47%
GGPPS
10
0.47%
SMO1/SMO2
9
0.42%
TDC
8
0.37%
PMT
8
0.37%
SGD
8
0.37%
CYP90D1
8
0.37%
CYP51G1
8
0.37%
AACT
8
0.37%
CNMT
7
0.33%
8HGO
7
0.33%
SLS
7
0.33%
16OMT
7
0.33%
DFR
6
0.28%
SQS/FDFT1
6
0.28%
HDS/IspG
6
0.28%
CYP80B1
5
0.23%
7DLH
5
0.23%
CPR
5
0.23%
DWF1
5
0.23%
SQE
5
0.23%
MCT/IspD
5
0.23%
MVK
5
0.23%
FPPS
5
0.23%
CCR
4
0.19%
F5H/CYP84A
4
0.19%
DET2
4
0.19%
DXS
4
0.19%
MVD
4
0.19%
ADC
3
0.14%
BBE
3
0.14%
XMT_MXMT_DXMT
3
0.14%
CCoAOMT
3
0.14%
MPO
2
0.09%
ISY
2
0.09%
CHI
2
0.09%
HPPR
2
0.09%
HYD1
2
0.09%
MDS/IspF
2
0.09%
GPPS
2
0.09%
HMGS
2
0.09%
TYDC_DDC
1
0.05%
FLS
1
0.05%
FK
1
0.05%
CPI1
1
0.05%
DWF7
1
0.05%
DWF5
1
0.05%
HDR/IspH
1
0.05%
IDI
1
0.05%
HMGR
1
0.05%
DXR
1
0.05%
CMK/IspE
1
0.05%
PMK
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 193 | 13 | POD (75) | View species results |
| Terpenoid pathway | 166 | 19 | BAHD (60) | View species results |
| Alkaloid pathway | 131 | 19 | T3O (24) | View species results |
| Rosmarinic acid pathway | 96 | 7 | C4H (48) | View species results |
| Flavonoid pathway | 72 | 11 | 4CL (14) | View species results |
| Steroid pathway | 57 | 12 | CAS (19) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 947 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 178 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Fossombronia7180279700 | Phenylpropanoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Fossombronia720280840 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Fossombronia7370285330 | Phenylpropanoid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Fossombronia7370285340 | Phenylpropanoid | 4CL | low | borderline | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Fossombronia8000312920 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Fossombronia8420343130 | Phenylpropanoid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Fossombronia843490345280 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Fossombronia8800379260 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Fossombronia10130003000 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Fossombronia10390010510 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Fossombronia10750023020 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Fossombronia11310036520 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Fossombronia11510040690 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Fossombronia11830046800 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Fossombronia11830046810 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Fossombronia12360062010 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Fossombronia12710070040 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Fossombronia1659800104650 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Fossombronia1659810104660 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Fossombronia1890118110 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Fossombronia1900119480 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Fossombronia2330146990 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Fossombronia2640160910 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Fossombronia3770179980 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Fossombronia5520217680 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Fossombronia5530217870 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Fossombronia5850230770 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| Fossombronia650254530 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Fossombronia690268200 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Fossombronia7180279700 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Fossombronia720280840 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Fossombronia7370285330 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Fossombronia7370285340 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Fossombronia8000312920 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Fossombronia8420343130 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Fossombronia843490345280 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Fossombronia8800379260 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |