PlantSME Plant secondary metabolism enzyme database

Fossombronia (fossombronia)

Imported from atlas release summary for Fossombronia.

715
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.99% Terpenoid pathway 23.22% Alkaloid pathway 18.32% Rosmarinic acid pathway 13.43% Flavonoid pathway 10.07% Steroid pathway 7.97%
Family Distribution
C4H 8.84% C3'H/CYP98A 6.28% BAHD 5.54% CYP76 5.12% 4CL 4.05% POD 3.82% IFS 3.77% T3O 3.07%
Other Families 59.52%
More Families (95)
BR6OX2/CYP85A2 59 2.75% F3H 54 2.51% DWF4/CYP90B1 54 2.51% STR 52 2.42% NMT 49 2.28% PAL 42 1.95% F3'H/CYP75B 35 1.63% GS 33 1.54% CSE 33 1.54% RAS 32 1.49% IFR 30 1.4% TRI/TRII 29 1.35% G8O/G8H 29 1.35% H6H 29 1.35% CODM/T6ODM 28 1.3% F3'5'H/CYP75A 27 1.26% HCT 27 1.26% SMT1/SMT2/SMT3 27 1.26% IO 26 1.21% T16H 26 1.21% CAD 25 1.16% PYKS 23 1.07% CAS 20 0.93% UGT 19 0.88% LAC 18 0.84% LAMT 17 0.79% BR6OX1/CYP85A1 17 0.79% CYP71 17 0.79% UFGT 15 0.7% TPS 15 0.7% 7DLGT 14 0.65% CHS 14 0.65% COMT 14 0.65% CPD/CYP90A1 14 0.65% CYP719 13 0.6% FNS 13 0.6% NCS 12 0.56% GES 11 0.51% ANS/LDOX 11 0.51% ANR 11 0.51% TAT 11 0.51% ROT3/CYP90C1 11 0.51% COR 10 0.47% GGPPS 10 0.47% SMO1/SMO2 9 0.42% TDC 8 0.37% PMT 8 0.37% SGD 8 0.37% CYP90D1 8 0.37% CYP51G1 8 0.37% AACT 8 0.37% CNMT 7 0.33% 8HGO 7 0.33% SLS 7 0.33% 16OMT 7 0.33% DFR 6 0.28% SQS/FDFT1 6 0.28% HDS/IspG 6 0.28% CYP80B1 5 0.23% 7DLH 5 0.23% CPR 5 0.23% DWF1 5 0.23% SQE 5 0.23% MCT/IspD 5 0.23% MVK 5 0.23% FPPS 5 0.23% CCR 4 0.19% F5H/CYP84A 4 0.19% DET2 4 0.19% DXS 4 0.19% MVD 4 0.19% ADC 3 0.14% BBE 3 0.14% XMT_MXMT_DXMT 3 0.14% CCoAOMT 3 0.14% MPO 2 0.09% ISY 2 0.09% CHI 2 0.09% HPPR 2 0.09% HYD1 2 0.09% MDS/IspF 2 0.09% GPPS 2 0.09% HMGS 2 0.09% TYDC_DDC 1 0.05% FLS 1 0.05% FK 1 0.05% CPI1 1 0.05% DWF7 1 0.05% DWF5 1 0.05% HDR/IspH 1 0.05% IDI 1 0.05% HMGR 1 0.05% DXR 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 193 13 POD (75) View species results
Terpenoid pathway 166 19 BAHD (60) View species results
Alkaloid pathway 131 19 T3O (24) View species results
Rosmarinic acid pathway 96 7 C4H (48) View species results
Flavonoid pathway 72 11 4CL (14) View species results
Steroid pathway 57 12 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 947 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 178 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
Fossombronia11290035070 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia1290074620 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia1290074630 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia1360079830 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia1660104780 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia1670106150 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Fossombronia1900119050 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia2040128310 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Fossombronia2160136010 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
Fossombronia2240141300 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Fossombronia2300144440 Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
Fossombronia2300144470 Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
Fossombronia2380149690 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia3700179300 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia4440190680 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Fossombronia5840228010 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Fossombronia670260340 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia6890268080 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Fossombronia855350362100 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Fossombronia860890370660 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Fossombronia8610370780 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia9200392110 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Fossombronia9650400560 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Fossombronia9930411380 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Fossombronia9980413630 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE