PlantSME Plant secondary metabolism enzyme database

Fossombronia (fossombronia)

Imported from atlas release summary for Fossombronia.

715
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.99% Terpenoid pathway 23.22% Alkaloid pathway 18.32% Rosmarinic acid pathway 13.43% Flavonoid pathway 10.07% Steroid pathway 7.97%
Family Distribution
C4H 8.84% C3'H/CYP98A 6.28% BAHD 5.54% CYP76 5.12% 4CL 4.05% POD 3.82% IFS 3.77% T3O 3.07%
Other Families 59.52%
More Families (95)
BR6OX2/CYP85A2 59 2.75% F3H 54 2.51% DWF4/CYP90B1 54 2.51% STR 52 2.42% NMT 49 2.28% PAL 42 1.95% F3'H/CYP75B 35 1.63% GS 33 1.54% CSE 33 1.54% RAS 32 1.49% IFR 30 1.4% TRI/TRII 29 1.35% G8O/G8H 29 1.35% H6H 29 1.35% CODM/T6ODM 28 1.3% F3'5'H/CYP75A 27 1.26% HCT 27 1.26% SMT1/SMT2/SMT3 27 1.26% IO 26 1.21% T16H 26 1.21% CAD 25 1.16% PYKS 23 1.07% CAS 20 0.93% UGT 19 0.88% LAC 18 0.84% LAMT 17 0.79% BR6OX1/CYP85A1 17 0.79% CYP71 17 0.79% UFGT 15 0.7% TPS 15 0.7% 7DLGT 14 0.65% CHS 14 0.65% COMT 14 0.65% CPD/CYP90A1 14 0.65% CYP719 13 0.6% FNS 13 0.6% NCS 12 0.56% GES 11 0.51% ANS/LDOX 11 0.51% ANR 11 0.51% TAT 11 0.51% ROT3/CYP90C1 11 0.51% COR 10 0.47% GGPPS 10 0.47% SMO1/SMO2 9 0.42% TDC 8 0.37% PMT 8 0.37% SGD 8 0.37% CYP90D1 8 0.37% CYP51G1 8 0.37% AACT 8 0.37% CNMT 7 0.33% 8HGO 7 0.33% SLS 7 0.33% 16OMT 7 0.33% DFR 6 0.28% SQS/FDFT1 6 0.28% HDS/IspG 6 0.28% CYP80B1 5 0.23% 7DLH 5 0.23% CPR 5 0.23% DWF1 5 0.23% SQE 5 0.23% MCT/IspD 5 0.23% MVK 5 0.23% FPPS 5 0.23% CCR 4 0.19% F5H/CYP84A 4 0.19% DET2 4 0.19% DXS 4 0.19% MVD 4 0.19% ADC 3 0.14% BBE 3 0.14% XMT_MXMT_DXMT 3 0.14% CCoAOMT 3 0.14% MPO 2 0.09% ISY 2 0.09% CHI 2 0.09% HPPR 2 0.09% HYD1 2 0.09% MDS/IspF 2 0.09% GPPS 2 0.09% HMGS 2 0.09% TYDC_DDC 1 0.05% FLS 1 0.05% FK 1 0.05% CPI1 1 0.05% DWF7 1 0.05% DWF5 1 0.05% HDR/IspH 1 0.05% IDI 1 0.05% HMGR 1 0.05% DXR 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 193 13 POD (75) View species results
Terpenoid pathway 166 19 BAHD (60) View species results
Alkaloid pathway 131 19 T3O (24) View species results
Rosmarinic acid pathway 96 7 C4H (48) View species results
Flavonoid pathway 72 11 4CL (14) View species results
Steroid pathway 57 12 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 947 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 178 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Gene Pathway Family Confidence Status Best Target
Fossombronia10710022340 Terpenoid UGT medium pass UGT__00076__sp_Q8L7M0_TUN_ARATH
Fossombronia1280071900 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Fossombronia1280071910 Terpenoid UGT medium pass UGT__00079__sp_Q94A84_U72E1_ARATH
Fossombronia1280071920 Terpenoid UGT low borderline UGT__00022__sp_B2XBQ5_85A19_PRUDU
Fossombronia1280071990 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Fossombronia3280171800 Terpenoid UGT low borderline UGT__00050__sp_O22822_U74F2_ARATH
Fossombronia3280171810 Terpenoid UGT medium pass UGT__00001__sp_A0A067YB04_UGT1_PUEML
Fossombronia3990184400 Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
Fossombronia5930234890 Terpenoid UGT medium pass UGT__00022__sp_B2XBQ5_85A19_PRUDU
Fossombronia6010238070 Terpenoid UGT medium pass UGT__00002__sp_A0A067YBQ3_UGT13_PUEML
Fossombronia6730261620 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Fossombronia690268760 Terpenoid UGT low borderline UGT__00051__sp_O23382_U71B5_ARATH
Fossombronia690268770 Terpenoid UGT medium pass UGT__00108__sp_Q9SYK9_U74E2_ARATH
Fossombronia7370285440 Terpenoid UGT medium pass UGT__00030__sp_D3UAG3_U88F2_PYRCO
Fossombronia7370285460 Terpenoid UGT low borderline UGT__00103__sp_Q9M156_U72B1_ARATH
Fossombronia743030287620 Terpenoid UGT low borderline UGT__00034__sp_F8WLS6_UGT6_CATRO
Fossombronia827450330080 Terpenoid UGT medium pass UGT__00002__sp_A0A067YBQ3_UGT13_PUEML
Fossombronia853280359890 Terpenoid UGT low borderline UGT__00002__sp_A0A067YBQ3_UGT13_PUEML
Fossombronia860260370010 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH