PlantSME Plant secondary metabolism enzyme database

Fossombronia (fossombronia)

Imported from atlas release summary for Fossombronia.

715
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.99% Terpenoid pathway 23.22% Alkaloid pathway 18.32% Rosmarinic acid pathway 13.43% Flavonoid pathway 10.07% Steroid pathway 7.97%
Family Distribution
C4H 8.84% C3'H/CYP98A 6.28% BAHD 5.54% CYP76 5.12% 4CL 4.05% POD 3.82% IFS 3.77% T3O 3.07%
Other Families 59.52%
More Families (95)
BR6OX2/CYP85A2 59 2.75% F3H 54 2.51% DWF4/CYP90B1 54 2.51% STR 52 2.42% NMT 49 2.28% PAL 42 1.95% F3'H/CYP75B 35 1.63% GS 33 1.54% CSE 33 1.54% RAS 32 1.49% IFR 30 1.4% TRI/TRII 29 1.35% G8O/G8H 29 1.35% H6H 29 1.35% CODM/T6ODM 28 1.3% F3'5'H/CYP75A 27 1.26% HCT 27 1.26% SMT1/SMT2/SMT3 27 1.26% IO 26 1.21% T16H 26 1.21% CAD 25 1.16% PYKS 23 1.07% CAS 20 0.93% UGT 19 0.88% LAC 18 0.84% LAMT 17 0.79% BR6OX1/CYP85A1 17 0.79% CYP71 17 0.79% UFGT 15 0.7% TPS 15 0.7% 7DLGT 14 0.65% CHS 14 0.65% COMT 14 0.65% CPD/CYP90A1 14 0.65% CYP719 13 0.6% FNS 13 0.6% NCS 12 0.56% GES 11 0.51% ANS/LDOX 11 0.51% ANR 11 0.51% TAT 11 0.51% ROT3/CYP90C1 11 0.51% COR 10 0.47% GGPPS 10 0.47% SMO1/SMO2 9 0.42% TDC 8 0.37% PMT 8 0.37% SGD 8 0.37% CYP90D1 8 0.37% CYP51G1 8 0.37% AACT 8 0.37% CNMT 7 0.33% 8HGO 7 0.33% SLS 7 0.33% 16OMT 7 0.33% DFR 6 0.28% SQS/FDFT1 6 0.28% HDS/IspG 6 0.28% CYP80B1 5 0.23% 7DLH 5 0.23% CPR 5 0.23% DWF1 5 0.23% SQE 5 0.23% MCT/IspD 5 0.23% MVK 5 0.23% FPPS 5 0.23% CCR 4 0.19% F5H/CYP84A 4 0.19% DET2 4 0.19% DXS 4 0.19% MVD 4 0.19% ADC 3 0.14% BBE 3 0.14% XMT_MXMT_DXMT 3 0.14% CCoAOMT 3 0.14% MPO 2 0.09% ISY 2 0.09% CHI 2 0.09% HPPR 2 0.09% HYD1 2 0.09% MDS/IspF 2 0.09% GPPS 2 0.09% HMGS 2 0.09% TYDC_DDC 1 0.05% FLS 1 0.05% FK 1 0.05% CPI1 1 0.05% DWF7 1 0.05% DWF5 1 0.05% HDR/IspH 1 0.05% IDI 1 0.05% HMGR 1 0.05% DXR 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 193 13 POD (75) View species results
Terpenoid pathway 166 19 BAHD (60) View species results
Alkaloid pathway 131 19 T3O (24) View species results
Rosmarinic acid pathway 96 7 C4H (48) View species results
Flavonoid pathway 72 11 4CL (14) View species results
Steroid pathway 57 12 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 947 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 178 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
Fossombronia1320076810 Rosmarinic Acid CPR medium pass CPR__00003__sp_C5YJG8_NCPR_SORBI
Fossombronia510206040 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
Fossombronia670260580 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Fossombronia7540291450 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
Fossombronia9230392700 Rosmarinic Acid CPR low borderline CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI