PlantSME Plant secondary metabolism enzyme database

Fossombronia (fossombronia)

Imported from atlas release summary for Fossombronia.

715
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.99% Terpenoid pathway 23.22% Alkaloid pathway 18.32% Rosmarinic acid pathway 13.43% Flavonoid pathway 10.07% Steroid pathway 7.97%
Family Distribution
C4H 8.84% C3'H/CYP98A 6.28% BAHD 5.54% CYP76 5.12% 4CL 4.05% POD 3.82% IFS 3.77% T3O 3.07%
Other Families 59.52%
More Families (95)
BR6OX2/CYP85A2 59 2.75% F3H 54 2.51% DWF4/CYP90B1 54 2.51% STR 52 2.42% NMT 49 2.28% PAL 42 1.95% F3'H/CYP75B 35 1.63% GS 33 1.54% CSE 33 1.54% RAS 32 1.49% IFR 30 1.4% TRI/TRII 29 1.35% G8O/G8H 29 1.35% H6H 29 1.35% CODM/T6ODM 28 1.3% F3'5'H/CYP75A 27 1.26% HCT 27 1.26% SMT1/SMT2/SMT3 27 1.26% IO 26 1.21% T16H 26 1.21% CAD 25 1.16% PYKS 23 1.07% CAS 20 0.93% UGT 19 0.88% LAC 18 0.84% LAMT 17 0.79% BR6OX1/CYP85A1 17 0.79% CYP71 17 0.79% UFGT 15 0.7% TPS 15 0.7% 7DLGT 14 0.65% CHS 14 0.65% COMT 14 0.65% CPD/CYP90A1 14 0.65% CYP719 13 0.6% FNS 13 0.6% NCS 12 0.56% GES 11 0.51% ANS/LDOX 11 0.51% ANR 11 0.51% TAT 11 0.51% ROT3/CYP90C1 11 0.51% COR 10 0.47% GGPPS 10 0.47% SMO1/SMO2 9 0.42% TDC 8 0.37% PMT 8 0.37% SGD 8 0.37% CYP90D1 8 0.37% CYP51G1 8 0.37% AACT 8 0.37% CNMT 7 0.33% 8HGO 7 0.33% SLS 7 0.33% 16OMT 7 0.33% DFR 6 0.28% SQS/FDFT1 6 0.28% HDS/IspG 6 0.28% CYP80B1 5 0.23% 7DLH 5 0.23% CPR 5 0.23% DWF1 5 0.23% SQE 5 0.23% MCT/IspD 5 0.23% MVK 5 0.23% FPPS 5 0.23% CCR 4 0.19% F5H/CYP84A 4 0.19% DET2 4 0.19% DXS 4 0.19% MVD 4 0.19% ADC 3 0.14% BBE 3 0.14% XMT_MXMT_DXMT 3 0.14% CCoAOMT 3 0.14% MPO 2 0.09% ISY 2 0.09% CHI 2 0.09% HPPR 2 0.09% HYD1 2 0.09% MDS/IspF 2 0.09% GPPS 2 0.09% HMGS 2 0.09% TYDC_DDC 1 0.05% FLS 1 0.05% FK 1 0.05% CPI1 1 0.05% DWF7 1 0.05% DWF5 1 0.05% HDR/IspH 1 0.05% IDI 1 0.05% HMGR 1 0.05% DXR 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 193 13 POD (75) View species results
Terpenoid pathway 166 19 BAHD (60) View species results
Alkaloid pathway 131 19 T3O (24) View species results
Rosmarinic acid pathway 96 7 C4H (48) View species results
Flavonoid pathway 72 11 4CL (14) View species results
Steroid pathway 57 12 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 947 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 178 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
Fossombronia831950333690 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Fossombronia832800334370 Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
Fossombronia8370339280 Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
Fossombronia842710344520 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Fossombronia845950349620 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Fossombronia846620350860 Terpenoid BAHD low borderline BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Fossombronia847320351900 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
Fossombronia850710356730 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Fossombronia851050357100 Terpenoid BAHD medium pass BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
Fossombronia851710357820 Terpenoid BAHD low borderline BAHD__00028__sp_O80467_SDT_ARATH
Fossombronia853520360190 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Fossombronia859240367870 Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Fossombronia860100369950 Terpenoid BAHD medium pass BAHD__00092__sp_Q9SU91_LPXA_ARATH
Fossombronia8830381180 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Fossombronia900387130 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
Fossombronia900387760 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Fossombronia9540397920 Terpenoid BAHD low borderline BAHD__00042__sp_Q500Z2_ZDH20_ARATH
Fossombronia9770405010 Terpenoid BAHD low borderline BAHD__00032__sp_P0DO84_AT_STRNX
Fossombronia9950412500 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA