Fossombronia (fossombronia)
Imported from atlas release summary for Fossombronia.
1074
Candidate Protein Records
715
Pathway-Level Records
2149
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2149
Family-Level Calls
C4H
8.84%
C3'H/CYP98A
6.28%
BAHD
5.54%
CYP76
5.12%
4CL
4.05%
POD
3.82%
IFS
3.77%
T3O
3.07%
Other Families
59.52%
More Families (95)
BR6OX2/CYP85A2
59
2.75%
F3H
54
2.51%
DWF4/CYP90B1
54
2.51%
STR
52
2.42%
NMT
49
2.28%
PAL
42
1.95%
F3'H/CYP75B
35
1.63%
GS
33
1.54%
CSE
33
1.54%
RAS
32
1.49%
IFR
30
1.4%
TRI/TRII
29
1.35%
G8O/G8H
29
1.35%
H6H
29
1.35%
CODM/T6ODM
28
1.3%
F3'5'H/CYP75A
27
1.26%
HCT
27
1.26%
SMT1/SMT2/SMT3
27
1.26%
IO
26
1.21%
T16H
26
1.21%
CAD
25
1.16%
PYKS
23
1.07%
CAS
20
0.93%
UGT
19
0.88%
LAC
18
0.84%
LAMT
17
0.79%
BR6OX1/CYP85A1
17
0.79%
CYP71
17
0.79%
UFGT
15
0.7%
TPS
15
0.7%
7DLGT
14
0.65%
CHS
14
0.65%
COMT
14
0.65%
CPD/CYP90A1
14
0.65%
CYP719
13
0.6%
FNS
13
0.6%
NCS
12
0.56%
GES
11
0.51%
ANS/LDOX
11
0.51%
ANR
11
0.51%
TAT
11
0.51%
ROT3/CYP90C1
11
0.51%
COR
10
0.47%
GGPPS
10
0.47%
SMO1/SMO2
9
0.42%
TDC
8
0.37%
PMT
8
0.37%
SGD
8
0.37%
CYP90D1
8
0.37%
CYP51G1
8
0.37%
AACT
8
0.37%
CNMT
7
0.33%
8HGO
7
0.33%
SLS
7
0.33%
16OMT
7
0.33%
DFR
6
0.28%
SQS/FDFT1
6
0.28%
HDS/IspG
6
0.28%
CYP80B1
5
0.23%
7DLH
5
0.23%
CPR
5
0.23%
DWF1
5
0.23%
SQE
5
0.23%
MCT/IspD
5
0.23%
MVK
5
0.23%
FPPS
5
0.23%
CCR
4
0.19%
F5H/CYP84A
4
0.19%
DET2
4
0.19%
DXS
4
0.19%
MVD
4
0.19%
ADC
3
0.14%
BBE
3
0.14%
XMT_MXMT_DXMT
3
0.14%
CCoAOMT
3
0.14%
MPO
2
0.09%
ISY
2
0.09%
CHI
2
0.09%
HPPR
2
0.09%
HYD1
2
0.09%
MDS/IspF
2
0.09%
GPPS
2
0.09%
HMGS
2
0.09%
TYDC_DDC
1
0.05%
FLS
1
0.05%
FK
1
0.05%
CPI1
1
0.05%
DWF7
1
0.05%
DWF5
1
0.05%
HDR/IspH
1
0.05%
IDI
1
0.05%
HMGR
1
0.05%
DXR
1
0.05%
CMK/IspE
1
0.05%
PMK
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 193 | 13 | POD (75) | View species results |
| Terpenoid pathway | 166 | 19 | BAHD (60) | View species results |
| Alkaloid pathway | 131 | 19 | T3O (24) | View species results |
| Rosmarinic acid pathway | 96 | 7 | C4H (48) | View species results |
| Flavonoid pathway | 72 | 11 | 4CL (14) | View species results |
| Steroid pathway | 57 | 12 | CAS (19) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 947 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 178 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Fossombronia10200005160 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia10220005880 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia10270006830 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia10270006840 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia10430012010 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia10620018430 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia10810023830 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia11070029970 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia11200033010 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia11270034400 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia11270034420 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia11350037270 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia11600041540 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia11730044240 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia11950050240 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia11980051700 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia12180056540 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia12360062270 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1260067860 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1260067900 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia12670068700 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia12740070910 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia12840073000 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1360078770 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1360078790 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia1360078970 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia1430084550 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1520090170 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia1550093140 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1590094990 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1600095780 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1617510096620 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1618090096640 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1636990099080 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia1637000099090 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia1639700099650 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1639710099700 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1654630103660 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia1654640103680 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia1660105130 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1661370105770 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1661400105830 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia1690107120 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia193250121870 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia2030127600 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia2040128700 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia2040128770 | Rosmarinic Acid | C4H | medium | pass |
| Fossombronia2140133560 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia2180136900 | Rosmarinic Acid | C4H | low | borderline |
| Fossombronia2180136930 | Rosmarinic Acid | C4H | low | borderline |