Fossombronia (fossombronia)
Imported from atlas release summary for Fossombronia.
715
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
715
Candidate Genes
C4H
8.84%
C3'H/CYP98A
6.28%
BAHD
5.54%
CYP76
5.12%
4CL
4.05%
POD
3.82%
IFS
3.77%
T3O
3.07%
Other Families
59.52%
More Families (95)
BR6OX2/CYP85A2
59
2.75%
F3H
54
2.51%
DWF4/CYP90B1
54
2.51%
STR
52
2.42%
NMT
49
2.28%
PAL
42
1.95%
F3'H/CYP75B
35
1.63%
GS
33
1.54%
CSE
33
1.54%
RAS
32
1.49%
IFR
30
1.4%
TRI/TRII
29
1.35%
G8O/G8H
29
1.35%
H6H
29
1.35%
CODM/T6ODM
28
1.3%
F3'5'H/CYP75A
27
1.26%
HCT
27
1.26%
SMT1/SMT2/SMT3
27
1.26%
IO
26
1.21%
T16H
26
1.21%
CAD
25
1.16%
PYKS
23
1.07%
CAS
20
0.93%
UGT
19
0.88%
LAC
18
0.84%
LAMT
17
0.79%
BR6OX1/CYP85A1
17
0.79%
CYP71
17
0.79%
UFGT
15
0.7%
TPS
15
0.7%
7DLGT
14
0.65%
CHS
14
0.65%
COMT
14
0.65%
CPD/CYP90A1
14
0.65%
CYP719
13
0.6%
FNS
13
0.6%
NCS
12
0.56%
GES
11
0.51%
ANS/LDOX
11
0.51%
ANR
11
0.51%
TAT
11
0.51%
ROT3/CYP90C1
11
0.51%
COR
10
0.47%
GGPPS
10
0.47%
SMO1/SMO2
9
0.42%
TDC
8
0.37%
PMT
8
0.37%
SGD
8
0.37%
CYP90D1
8
0.37%
CYP51G1
8
0.37%
AACT
8
0.37%
CNMT
7
0.33%
8HGO
7
0.33%
SLS
7
0.33%
16OMT
7
0.33%
DFR
6
0.28%
SQS/FDFT1
6
0.28%
HDS/IspG
6
0.28%
CYP80B1
5
0.23%
7DLH
5
0.23%
CPR
5
0.23%
DWF1
5
0.23%
SQE
5
0.23%
MCT/IspD
5
0.23%
MVK
5
0.23%
FPPS
5
0.23%
CCR
4
0.19%
F5H/CYP84A
4
0.19%
DET2
4
0.19%
DXS
4
0.19%
MVD
4
0.19%
ADC
3
0.14%
BBE
3
0.14%
XMT_MXMT_DXMT
3
0.14%
CCoAOMT
3
0.14%
MPO
2
0.09%
ISY
2
0.09%
CHI
2
0.09%
HPPR
2
0.09%
HYD1
2
0.09%
MDS/IspF
2
0.09%
GPPS
2
0.09%
HMGS
2
0.09%
TYDC_DDC
1
0.05%
FLS
1
0.05%
FK
1
0.05%
CPI1
1
0.05%
DWF7
1
0.05%
DWF5
1
0.05%
HDR/IspH
1
0.05%
IDI
1
0.05%
HMGR
1
0.05%
DXR
1
0.05%
CMK/IspE
1
0.05%
PMK
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 193 | 13 | POD (75) | View species results |
| Terpenoid pathway | 166 | 19 | BAHD (60) | View species results |
| Alkaloid pathway | 131 | 19 | T3O (24) | View species results |
| Rosmarinic acid pathway | 96 | 7 | C4H (48) | View species results |
| Flavonoid pathway | 72 | 11 | 4CL (14) | View species results |
| Steroid pathway | 57 | 12 | CAS (19) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 947 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 178 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Fossombronia9920411160 | Terpenoid | CYP76 | medium | pass |
| Fossombronia9920411170 | Terpenoid | CYP76 | medium | pass |
| Fossombronia9920411210 | Terpenoid | CYP76 | medium | borderline |
| Fossombronia9950412280 | Terpenoid | CYP76 | medium | pass |
| Fossombronia9950412370 | Terpenoid | CYP76 | medium | borderline |
| Fossombronia7840306430 | Terpenoid | DXR | high | pass |
| Fossombronia1420083880 | Terpenoid | DXS | medium | pass |
| Fossombronia2730163450 | Terpenoid | DXS | medium | pass |
| Fossombronia3130169840 | Terpenoid | DXS | low | borderline |
| Fossombronia5310211660 | Terpenoid | DXS | medium | pass |
| Fossombronia1740110120 | Terpenoid | FPPS | medium | pass |
| Fossombronia1930121670 | Terpenoid | FPPS | low | borderline |
| Fossombronia2330147070 | Terpenoid | FPPS | medium | pass |
| Fossombronia5230209670 | Terpenoid | FPPS | medium | pass |
| Fossombronia9390395880 | Terpenoid | FPPS | medium | pass |
| Fossombronia10110001800 | Terpenoid | GGPPS | medium | borderline |
| Fossombronia10110001840 | Terpenoid | GGPPS | medium | borderline |
| Fossombronia11740044350 | Terpenoid | GGPPS | medium | borderline |
| Fossombronia12590067580 | Terpenoid | GGPPS | low | borderline |
| Fossombronia12590067590 | Terpenoid | GGPPS | medium | borderline |
| Fossombronia12740070930 | Terpenoid | GGPPS | medium | borderline |
| Fossombronia5130207430 | Terpenoid | GGPPS | low | borderline |
| Fossombronia6280247520 | Terpenoid | GGPPS | medium | borderline |
| Fossombronia783780305990 | Terpenoid | GGPPS | medium | borderline |
| Fossombronia900387580 | Terpenoid | GGPPS | medium | borderline |
| Fossombronia630249560 | Terpenoid | GPPS | medium | borderline |
| Fossombronia6820265320 | Terpenoid | GPPS | low | borderline |
| Fossombronia2080131490 | Terpenoid | HDR/IspH | high | pass |
| Fossombronia10220005590 | Terpenoid | HDS/IspG | medium | pass |
| Fossombronia10220005600 | Terpenoid | HDS/IspG | medium | pass |
| Fossombronia1390082150 | Terpenoid | HDS/IspG | high | pass |
| Fossombronia1440085090 | Terpenoid | HDS/IspG | low | borderline |
| Fossombronia2080131500 | Terpenoid | HDS/IspG | high | pass |
| Fossombronia781160304380 | Terpenoid | HDS/IspG | low | borderline |
| Fossombronia5850230990 | Terpenoid | HMGR | medium | pass |
| Fossombronia6420252900 | Terpenoid | HMGS | high | pass |
| Fossombronia9860408820 | Terpenoid | HMGS | high | pass |
| Fossombronia3280171250 | Terpenoid | IDI | medium | pass |
| Fossombronia10370009950 | Terpenoid | MCT/IspD | low | borderline |
| Fossombronia10820023960 | Terpenoid | MCT/IspD | medium | pass |
| Fossombronia12260059160 | Terpenoid | MCT/IspD | low | borderline |
| Fossombronia1620097440 | Terpenoid | MCT/IspD | low | borderline |
| Fossombronia8490354540 | Terpenoid | MCT/IspD | high | pass |
| Fossombronia2360148660 | Terpenoid | MDS/IspF | high | pass |
| Fossombronia5720224400 | Terpenoid | MDS/IspF | low | borderline |
| Fossombronia1930121490 | Terpenoid | MVD | low | borderline |
| Fossombronia670260240 | Terpenoid | MVD | low | borderline |
| Fossombronia831180333130 | Terpenoid | MVD | medium | pass |
| Fossombronia870375260 | Terpenoid | MVD | low | borderline |
| Fossombronia12080054050 | Terpenoid | MVK | low | borderline |