Fragaria iinumae (fragaria_iinumae)
/
Imported from atlas release summary for Fragaria iinumae.
1309
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1309
Candidate Genes
C4H
6.34%
C3'H/CYP98A
6.07%
BAHD
5.5%
IFS
4.23%
UGT
4.23%
CYP76
3.63%
7DLGT
3.6%
UFGT
3.5%
Other Families
62.9%
More Families (96)
T3O
114
3.44%
POD
113
3.41%
F3H
109
3.29%
4CL
105
3.17%
NMT
81
2.45%
DWF4/CYP90B1
75
2.27%
H6H
68
2.05%
F3'H/CYP75B
63
1.9%
BR6OX2/CYP85A2
63
1.9%
CODM/T6ODM
60
1.81%
STR
59
1.78%
CAD
56
1.69%
LAC
50
1.51%
CAS
45
1.36%
SMT1/SMT2/SMT3
42
1.27%
CYP71
42
1.27%
CSE
40
1.21%
GS
37
1.12%
CYP90D1
35
1.06%
TPS
35
1.06%
TRI/TRII
34
1.03%
T16H
34
1.03%
GES
33
1.0%
TAT
33
1.0%
HCT
31
0.94%
IFR
30
0.91%
IO
24
0.73%
7DLH
24
0.73%
F3'5'H/CYP75A
24
0.73%
SGD
23
0.69%
SLS
23
0.69%
BR6OX1/CYP85A1
23
0.69%
ANR
22
0.66%
PYKS
21
0.63%
G8O/G8H
20
0.6%
COMT
20
0.6%
COR
19
0.57%
F5H/CYP84A
19
0.57%
PMT
18
0.54%
BBE
17
0.51%
CCR
16
0.48%
RAS
16
0.48%
SQE
15
0.45%
NCS
14
0.42%
FNS
13
0.39%
CPD/CYP90A1
13
0.39%
ANS/LDOX
12
0.36%
LAMT
11
0.33%
CCoAOMT
10
0.3%
MPO
9
0.27%
DFR
9
0.27%
PAL
9
0.27%
CYP51G1
9
0.27%
16OMT
8
0.24%
8HGO
8
0.24%
ROT3/CYP90C1
8
0.24%
CNMT
7
0.21%
CHS
6
0.18%
HPPR
6
0.18%
SQS/FDFT1
6
0.18%
HMGR
6
0.18%
FPPS
6
0.18%
ODC
5
0.15%
ISY
5
0.15%
CYP719
5
0.15%
CPR
5
0.15%
DET2
5
0.15%
TYDC_DDC
4
0.12%
MVK
4
0.12%
GGPPS
4
0.12%
AACT
4
0.12%
XMT_MXMT_DXMT
3
0.09%
CYP80B1
3
0.09%
SMO1/SMO2
3
0.09%
MVD
3
0.09%
DXS
3
0.09%
HDR/IspH
3
0.09%
CHI
2
0.06%
DWF1
2
0.06%
DWF7
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
ADC
1
0.03%
TDC
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
MCT/IspD
1
0.03%
PMK
1
0.03%
IDI
1
0.03%
CMK/IspE
1
0.03%
DXR
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
HDS/IspG
1
0.03%
GPPS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 385 | 18 | BAHD (141) | View species results |
| Alkaloid pathway | 294 | 19 | 7DLGT (52) | View species results |
| Phenylpropanoid pathway | 266 | 11 | POD (100) | View species results |
| Flavonoid pathway | 158 | 10 | UFGT (106) | View species results |
| Rosmarinic acid pathway | 114 | 7 | C4H (50) | View species results |
| Steroid pathway | 92 | 14 | CAS (40) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1292 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 229 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| fragaria_iinumae_evm.model.scaf_10.945 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_14.1983 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_28.145.2 | Alkaloid | GS | medium | pass |
| fragaria_iinumae_evm.model.scaf_28.146 | Alkaloid | GS | high | pass |
| fragaria_iinumae_evm.model.scaf_28.148 | Alkaloid | GS | high | pass |
| fragaria_iinumae_evm.model.scaf_28.150 | Alkaloid | GS | medium | pass |
| fragaria_iinumae_evm.model.scaf_28.151 | Alkaloid | GS | medium | pass |
| fragaria_iinumae_evm.model.scaf_28.152 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_28.603 | Alkaloid | GS | high | pass |
| fragaria_iinumae_evm.model.scaf_28.610 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_28.611 | Alkaloid | GS | medium | pass |
| fragaria_iinumae_evm.model.scaf_28.792 | Alkaloid | GS | medium | pass |
| fragaria_iinumae_evm.model.scaf_4.2075 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_4.2076 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_4.2077.1 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_4.2079 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_4.2080 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_4.2088 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_4.2089 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_4.2092 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_4.331 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_41.1066 | Alkaloid | GS | high | pass |
| fragaria_iinumae_evm.model.scaf_41.1067 | Alkaloid | GS | medium | pass |
| fragaria_iinumae_evm.model.scaf_41.175 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_46.1052 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_46.1053 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_46.1200 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_46.1201 | Alkaloid | GS | medium | pass |
| fragaria_iinumae_evm.model.scaf_46.977 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_51.480 | Alkaloid | GS | medium | pass |
| fragaria_iinumae_evm.model.scaf_65.473 | Alkaloid | GS | medium | pass |
| fragaria_iinumae_evm.model.scaf_78.1104 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_78.271 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_79.1498 | Alkaloid | GS | high | pass |
| fragaria_iinumae_evm.model.scaf_85.447 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_93.382 | Alkaloid | GS | low | borderline |
| fragaria_iinumae_evm.model.scaf_93.384 | Alkaloid | GS | low | borderline |