Fragaria iinumae (fragaria_iinumae)
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Imported from atlas release summary for Fragaria iinumae.
1309
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1309
Candidate Genes
C4H
6.34%
C3'H/CYP98A
6.07%
BAHD
5.5%
IFS
4.23%
UGT
4.23%
CYP76
3.63%
7DLGT
3.6%
UFGT
3.5%
Other Families
62.9%
More Families (96)
T3O
114
3.44%
POD
113
3.41%
F3H
109
3.29%
4CL
105
3.17%
NMT
81
2.45%
DWF4/CYP90B1
75
2.27%
H6H
68
2.05%
F3'H/CYP75B
63
1.9%
BR6OX2/CYP85A2
63
1.9%
CODM/T6ODM
60
1.81%
STR
59
1.78%
CAD
56
1.69%
LAC
50
1.51%
CAS
45
1.36%
SMT1/SMT2/SMT3
42
1.27%
CYP71
42
1.27%
CSE
40
1.21%
GS
37
1.12%
CYP90D1
35
1.06%
TPS
35
1.06%
TRI/TRII
34
1.03%
T16H
34
1.03%
GES
33
1.0%
TAT
33
1.0%
HCT
31
0.94%
IFR
30
0.91%
IO
24
0.73%
7DLH
24
0.73%
F3'5'H/CYP75A
24
0.73%
SGD
23
0.69%
SLS
23
0.69%
BR6OX1/CYP85A1
23
0.69%
ANR
22
0.66%
PYKS
21
0.63%
G8O/G8H
20
0.6%
COMT
20
0.6%
COR
19
0.57%
F5H/CYP84A
19
0.57%
PMT
18
0.54%
BBE
17
0.51%
CCR
16
0.48%
RAS
16
0.48%
SQE
15
0.45%
NCS
14
0.42%
FNS
13
0.39%
CPD/CYP90A1
13
0.39%
ANS/LDOX
12
0.36%
LAMT
11
0.33%
CCoAOMT
10
0.3%
MPO
9
0.27%
DFR
9
0.27%
PAL
9
0.27%
CYP51G1
9
0.27%
16OMT
8
0.24%
8HGO
8
0.24%
ROT3/CYP90C1
8
0.24%
CNMT
7
0.21%
CHS
6
0.18%
HPPR
6
0.18%
SQS/FDFT1
6
0.18%
HMGR
6
0.18%
FPPS
6
0.18%
ODC
5
0.15%
ISY
5
0.15%
CYP719
5
0.15%
CPR
5
0.15%
DET2
5
0.15%
TYDC_DDC
4
0.12%
MVK
4
0.12%
GGPPS
4
0.12%
AACT
4
0.12%
XMT_MXMT_DXMT
3
0.09%
CYP80B1
3
0.09%
SMO1/SMO2
3
0.09%
MVD
3
0.09%
DXS
3
0.09%
HDR/IspH
3
0.09%
CHI
2
0.06%
DWF1
2
0.06%
DWF7
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
ADC
1
0.03%
TDC
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
MCT/IspD
1
0.03%
PMK
1
0.03%
IDI
1
0.03%
CMK/IspE
1
0.03%
DXR
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
HDS/IspG
1
0.03%
GPPS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 385 | 18 | BAHD (141) | View species results |
| Alkaloid pathway | 294 | 19 | 7DLGT (52) | View species results |
| Phenylpropanoid pathway | 266 | 11 | POD (100) | View species results |
| Flavonoid pathway | 158 | 10 | UFGT (106) | View species results |
| Rosmarinic acid pathway | 114 | 7 | C4H (50) | View species results |
| Steroid pathway | 92 | 14 | CAS (40) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1292 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 229 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fragaria_iinumae_evm.model.scaf_10.427 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_10.452 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| fragaria_iinumae_evm.model.scaf_10.453 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_10.748 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_13.417 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_13.485 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_14.1357 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_14.1373 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_14.221 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_21.60 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_25.33 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_28.265 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_28.267_evm.model.scaf_28.268 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_28.275 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_28.687 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_4.1035 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_4.1037 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_4.1901 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_4.2509 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_4.404 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_41.1162 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_41.271 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_46.372 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_46.511 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_51.354 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_54.534 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_54.953.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_54.956 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_63.132 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_63.4 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_66.53 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_73.313 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_73.399 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_73.41 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.1528 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.497 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.646 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.648 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.653 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.655 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.708 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.788.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.791 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_78.906 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_79.370_evm.model.scaf_79.371 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| fragaria_iinumae_evm.model.scaf_79.781 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| fragaria_iinumae_evm.model.scaf_79.929 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| fragaria_iinumae_evm.model.scaf_79.931 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| fragaria_iinumae_evm.model.scaf_8.111 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |