PlantSME Plant secondary metabolism enzyme database

Fragaria iinumae (fragaria_iinumae)

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Imported from atlas release summary for Fragaria iinumae.

1309
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.41% Alkaloid pathway 22.46% Phenylpropanoid pathway 20.32% Flavonoid pathway 12.07% Rosmarinic acid pathway 8.71% Steroid pathway 7.03%
Family Distribution
C4H 6.34% C3'H/CYP98A 6.07% BAHD 5.5% IFS 4.23% UGT 4.23% CYP76 3.63% 7DLGT 3.6% UFGT 3.5%
Other Families 62.9%
More Families (96)
T3O 114 3.44% POD 113 3.41% F3H 109 3.29% 4CL 105 3.17% NMT 81 2.45% DWF4/CYP90B1 75 2.27% H6H 68 2.05% F3'H/CYP75B 63 1.9% BR6OX2/CYP85A2 63 1.9% CODM/T6ODM 60 1.81% STR 59 1.78% CAD 56 1.69% LAC 50 1.51% CAS 45 1.36% SMT1/SMT2/SMT3 42 1.27% CYP71 42 1.27% CSE 40 1.21% GS 37 1.12% CYP90D1 35 1.06% TPS 35 1.06% TRI/TRII 34 1.03% T16H 34 1.03% GES 33 1.0% TAT 33 1.0% HCT 31 0.94% IFR 30 0.91% IO 24 0.73% 7DLH 24 0.73% F3'5'H/CYP75A 24 0.73% SGD 23 0.69% SLS 23 0.69% BR6OX1/CYP85A1 23 0.69% ANR 22 0.66% PYKS 21 0.63% G8O/G8H 20 0.6% COMT 20 0.6% COR 19 0.57% F5H/CYP84A 19 0.57% PMT 18 0.54% BBE 17 0.51% CCR 16 0.48% RAS 16 0.48% SQE 15 0.45% NCS 14 0.42% FNS 13 0.39% CPD/CYP90A1 13 0.39% ANS/LDOX 12 0.36% LAMT 11 0.33% CCoAOMT 10 0.3% MPO 9 0.27% DFR 9 0.27% PAL 9 0.27% CYP51G1 9 0.27% 16OMT 8 0.24% 8HGO 8 0.24% ROT3/CYP90C1 8 0.24% CNMT 7 0.21% CHS 6 0.18% HPPR 6 0.18% SQS/FDFT1 6 0.18% HMGR 6 0.18% FPPS 6 0.18% ODC 5 0.15% ISY 5 0.15% CYP719 5 0.15% CPR 5 0.15% DET2 5 0.15% TYDC_DDC 4 0.12% MVK 4 0.12% GGPPS 4 0.12% AACT 4 0.12% XMT_MXMT_DXMT 3 0.09% CYP80B1 3 0.09% SMO1/SMO2 3 0.09% MVD 3 0.09% DXS 3 0.09% HDR/IspH 3 0.09% CHI 2 0.06% DWF1 2 0.06% DWF7 2 0.06% 6OMT_4OMT_SOMT 1 0.03% ADC 1 0.03% TDC 1 0.03% DWF5 1 0.03% HYD1 1 0.03% CPI1 1 0.03% FK 1 0.03% MCT/IspD 1 0.03% PMK 1 0.03% IDI 1 0.03% CMK/IspE 1 0.03% DXR 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03% GPPS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 385 18 BAHD (141) View species results
Alkaloid pathway 294 19 7DLGT (52) View species results
Phenylpropanoid pathway 266 11 POD (100) View species results
Flavonoid pathway 158 10 UFGT (106) View species results
Rosmarinic acid pathway 114 7 C4H (50) View species results
Steroid pathway 92 14 CAS (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1292 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 229 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
fragaria_iinumae_evm.model.scaf_10.349 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_13.551_evm.model.scaf_13.552 Alkaloid PYKS high pass
fragaria_iinumae_evm.model.scaf_14.1385 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_25.319 Alkaloid PYKS high pass
fragaria_iinumae_evm.model.scaf_4.1044 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_4.1178 Alkaloid PYKS medium pass
fragaria_iinumae_evm.model.scaf_4.1179 Alkaloid PYKS medium pass
fragaria_iinumae_evm.model.scaf_4.1180 Alkaloid PYKS high pass
fragaria_iinumae_evm.model.scaf_4.168 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_4.2649 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_4.423 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_46.249 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_46.252 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_46.524 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_51.209 Alkaloid PYKS high pass
fragaria_iinumae_evm.model.scaf_51.841 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_52.152 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_66.19 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_78.224 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_78.297 Alkaloid PYKS low borderline
fragaria_iinumae_evm.model.scaf_79.357 Alkaloid PYKS low borderline