Fragaria iinumae (fragaria_iinumae)
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Imported from atlas release summary for Fragaria iinumae.
1597
Candidate Protein Records
1309
Pathway-Level Records
3310
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3310
Family-Level Calls
C4H
6.34%
C3'H/CYP98A
6.07%
BAHD
5.5%
IFS
4.23%
UGT
4.23%
CYP76
3.63%
7DLGT
3.6%
UFGT
3.5%
Other Families
62.9%
More Families (96)
T3O
114
3.44%
POD
113
3.41%
F3H
109
3.29%
4CL
105
3.17%
NMT
81
2.45%
DWF4/CYP90B1
75
2.27%
H6H
68
2.05%
F3'H/CYP75B
63
1.9%
BR6OX2/CYP85A2
63
1.9%
CODM/T6ODM
60
1.81%
STR
59
1.78%
CAD
56
1.69%
LAC
50
1.51%
CAS
45
1.36%
SMT1/SMT2/SMT3
42
1.27%
CYP71
42
1.27%
CSE
40
1.21%
GS
37
1.12%
CYP90D1
35
1.06%
TPS
35
1.06%
TRI/TRII
34
1.03%
T16H
34
1.03%
GES
33
1.0%
TAT
33
1.0%
HCT
31
0.94%
IFR
30
0.91%
IO
24
0.73%
7DLH
24
0.73%
F3'5'H/CYP75A
24
0.73%
SGD
23
0.69%
SLS
23
0.69%
BR6OX1/CYP85A1
23
0.69%
ANR
22
0.66%
PYKS
21
0.63%
G8O/G8H
20
0.6%
COMT
20
0.6%
COR
19
0.57%
F5H/CYP84A
19
0.57%
PMT
18
0.54%
BBE
17
0.51%
CCR
16
0.48%
RAS
16
0.48%
SQE
15
0.45%
NCS
14
0.42%
FNS
13
0.39%
CPD/CYP90A1
13
0.39%
ANS/LDOX
12
0.36%
LAMT
11
0.33%
CCoAOMT
10
0.3%
MPO
9
0.27%
DFR
9
0.27%
PAL
9
0.27%
CYP51G1
9
0.27%
16OMT
8
0.24%
8HGO
8
0.24%
ROT3/CYP90C1
8
0.24%
CNMT
7
0.21%
CHS
6
0.18%
HPPR
6
0.18%
SQS/FDFT1
6
0.18%
HMGR
6
0.18%
FPPS
6
0.18%
ODC
5
0.15%
ISY
5
0.15%
CYP719
5
0.15%
CPR
5
0.15%
DET2
5
0.15%
TYDC_DDC
4
0.12%
MVK
4
0.12%
GGPPS
4
0.12%
AACT
4
0.12%
XMT_MXMT_DXMT
3
0.09%
CYP80B1
3
0.09%
SMO1/SMO2
3
0.09%
MVD
3
0.09%
DXS
3
0.09%
HDR/IspH
3
0.09%
CHI
2
0.06%
DWF1
2
0.06%
DWF7
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
ADC
1
0.03%
TDC
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
MCT/IspD
1
0.03%
PMK
1
0.03%
IDI
1
0.03%
CMK/IspE
1
0.03%
DXR
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
HDS/IspG
1
0.03%
GPPS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 385 | 18 | BAHD (141) | View species results |
| Alkaloid pathway | 294 | 19 | 7DLGT (52) | View species results |
| Phenylpropanoid pathway | 266 | 11 | POD (100) | View species results |
| Flavonoid pathway | 158 | 10 | UFGT (106) | View species results |
| Rosmarinic acid pathway | 114 | 7 | C4H (50) | View species results |
| Steroid pathway | 92 | 14 | CAS (40) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1292 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 229 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fragaria_iinumae_evm.model.scaf_91.660 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| fragaria_iinumae_evm.model.scaf_91.661 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| fragaria_iinumae_evm.model.scaf_91.662 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| fragaria_iinumae_evm.model.scaf_91.663 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| fragaria_iinumae_evm.model.scaf_91.761 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| fragaria_iinumae_evm.model.scaf_93.112 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| fragaria_iinumae_evm.model.scaf_4.1899 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| fragaria_iinumae_evm.model.scaf_4.2399 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| fragaria_iinumae_evm.model.scaf_93.848 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| fragaria_iinumae_evm.model.scaf_93.849 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| fragaria_iinumae_evm.model.scaf_10.779 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00002__sp_A0A0S2PM92_TCS1F_CAMCR |
| fragaria_iinumae_evm.model.scaf_14.168 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00002__sp_A0A0S2PM92_TCS1F_CAMCR |
| fragaria_iinumae_evm.model.scaf_86.87 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00006__sp_A4GE70_DXMT1_COFCA |
| fragaria_iinumae_evm.model.scaf_10.59.2 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| fragaria_iinumae_evm.model.scaf_13.13 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| fragaria_iinumae_evm.model.scaf_14.842 | Flavonoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| fragaria_iinumae_evm.model.scaf_25.41 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| fragaria_iinumae_evm.model.scaf_28.1000 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_iinumae_evm.model.scaf_28.946 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| fragaria_iinumae_evm.model.scaf_28.977 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_iinumae_evm.model.scaf_28.979 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_iinumae_evm.model.scaf_28.999 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_iinumae_evm.model.scaf_30.469 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| fragaria_iinumae_evm.model.scaf_4.1177 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_iinumae_evm.model.scaf_4.1272 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| fragaria_iinumae_evm.model.scaf_4.171 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| fragaria_iinumae_evm.model.scaf_4.2583 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_iinumae_evm.model.scaf_4.376 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| fragaria_iinumae_evm.model.scaf_41.1054 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| fragaria_iinumae_evm.model.scaf_45.3 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| fragaria_iinumae_evm.model.scaf_46.1624 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| fragaria_iinumae_evm.model.scaf_51.727 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| fragaria_iinumae_evm.model.scaf_54.1185 | Flavonoid | 4CL | medium | pass | 4CL__00009__sp_Q67W82_4CL4_ORYSJ |
| fragaria_iinumae_evm.model.scaf_54.200 | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| fragaria_iinumae_evm.model.scaf_54.202 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| fragaria_iinumae_evm.model.scaf_54.408 | Flavonoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| fragaria_iinumae_evm.model.scaf_54.784 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_iinumae_evm.model.scaf_65.672.2 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| fragaria_iinumae_evm.model.scaf_66.182 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| fragaria_iinumae_evm.model.scaf_76.15 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| fragaria_iinumae_evm.model.scaf_78.1337 | Flavonoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| fragaria_iinumae_evm.model.scaf_78.533 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| fragaria_iinumae_evm.model.scaf_79.928 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_iinumae_evm.model.scaf_79.932 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_iinumae_evm.model.scaf_8.184 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| fragaria_iinumae_evm.model.scaf_91.1003 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| fragaria_iinumae_evm.model.scaf_93.909 | Flavonoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| fragaria_iinumae_evm.model.scaf_94.273 | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| fragaria_iinumae_evm.model.scaf_10.350.1 | Flavonoid | ANR | medium | borderline | ANR__00001__sp_Q5FB34_ANRCS_VITVI |
| fragaria_iinumae_evm.model.scaf_13.495 | Flavonoid | ANR | medium | borderline | ANR__00001__sp_Q5FB34_ANRCS_VITVI |