PlantSME Plant secondary metabolism enzyme database

Gastrodia elata (gastrodia_elata)

Imported from atlas release summary for Gastrodia elata.

878
Candidate Protein Records
699
Pathway-Level Records
1820
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.04% Alkaloid pathway 23.03% Phenylpropanoid pathway 19.74% Flavonoid pathway 14.02% Rosmarinic acid pathway 10.01% Steroid pathway 5.15%
Family Distribution
C4H 7.03% C3'H/CYP98A 6.48% BAHD 5.6% 4CL 4.62% T3O 4.07% IFS 3.85% POD 3.52% CYP76 3.46%
Other Families 61.37%
More Families (95)
UGT 60 3.3% NMT 57 3.13% 7DLGT 54 2.97% UFGT 54 2.97% F3'H/CYP75B 51 2.8% STR 45 2.47% BR6OX2/CYP85A2 44 2.42% CYP71 44 2.42% DWF4/CYP90B1 37 2.03% F3H 36 1.98% CAD 30 1.65% GS 24 1.32% PYKS 22 1.21% SMT1/SMT2/SMT3 22 1.21% TPS 21 1.15% SLS 20 1.1% CODM/T6ODM 19 1.04% CYP90D1 19 1.04% GES 18 0.99% PAL 18 0.99% CAS 18 0.99% G8O/G8H 17 0.93% IFR 16 0.88% LAC 16 0.88% CSE 14 0.77% CYP51G1 14 0.77% H6H 13 0.71% SGD 13 0.71% T16H 12 0.66% NCS 12 0.66% COMT 12 0.66% TRI/TRII 11 0.6% CHS 11 0.6% ANR 11 0.6% F5H/CYP84A 10 0.55% IO 9 0.49% CNMT 9 0.49% FNS 9 0.49% CCR 9 0.49% RAS 9 0.49% ROT3/CYP90C1 9 0.49% BBE 8 0.44% PMT 7 0.38% 16OMT 7 0.38% HPPR 7 0.38% 8HGO 6 0.33% F3'5'H/CYP75A 6 0.33% GGPPS 6 0.33% LAMT 5 0.27% MPO 5 0.27% CYP719 5 0.27% SQS/FDFT1 5 0.27% DET2 5 0.27% AACT 5 0.27% DFR 4 0.22% CCoAOMT 4 0.22% HCT 4 0.22% CPR 4 0.22% TAT 4 0.22% FPPS 4 0.22% XMT_MXMT_DXMT 3 0.16% 7DLH 3 0.16% ISY 3 0.16% ANS/LDOX 3 0.16% CHI 3 0.16% BR6OX1/CYP85A1 3 0.16% CPD/CYP90A1 3 0.16% HMGR 3 0.16% HMGS 3 0.16% IDI 3 0.16% MVK 3 0.16% COR 2 0.11% ADC 2 0.11% 6OMT_4OMT_SOMT 2 0.11% CYP80B1 2 0.11% FLS 2 0.11% CPI1 2 0.11% SMO1/SMO2 2 0.11% MVD 2 0.11% CMK/IspE 2 0.11% HDR/IspH 2 0.11% TDC 1 0.05% TYDC_DDC 1 0.05% SQE 1 0.05% HYD1 1 0.05% FK 1 0.05% DWF1 1 0.05% DWF5 1 0.05% DWF7 1 0.05% HDS/IspG 1 0.05% MCT/IspD 1 0.05% DXS 1 0.05% PMK 1 0.05% DXR 1 0.05% MDS/IspF 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 196 19 BAHD (74) View species results
Alkaloid pathway 161 18 NMT (35) View species results
Phenylpropanoid pathway 138 12 POD (61) View species results
Flavonoid pathway 98 9 UFGT (51) View species results
Rosmarinic acid pathway 70 7 C4H (30) View species results
Steroid pathway 36 12 SMT1/SMT2/SMT3 (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 761 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 115 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
GelaGWHAAEX000001970167570.1 Alkaloid 7DLGT medium pass 7DLGT__00001__sp_U3U992_UGT8_CATRO
GelaGWHAAEX000002170174610.1 Alkaloid 7DLGT medium pass 7DLGT__00001__sp_U3U992_UGT8_CATRO
GelaGWHAAEX000005160187960.1 Alkaloid 7DLGT medium pass 7DLGT__00001__sp_U3U992_UGT8_CATRO
GelaGWHAAEX000025000189100.1 Alkaloid 7DLGT low borderline 7DLGT__00002__sp_U5NH37_7DLGT_CATRO