PlantSME Plant secondary metabolism enzyme database

Gossypium stocksii (gossypium_stocksii)

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Imported from atlas release summary for Gossypium stocksii.

1880
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.04% Alkaloid pathway 22.39% Phenylpropanoid pathway 22.29% Flavonoid pathway 11.54% Rosmarinic acid pathway 7.93% Steroid pathway 6.81%
Family Distribution
C4H 7.34% C3'H/CYP98A 6.32% BAHD 5.4% CYP76 4.1% T3O 3.83% IFS 3.83% POD 3.67% F3H 3.36%
Other Families 62.15%
More Families (98)
UGT 160 3.26% 7DLGT 158 3.22% UFGT 158 3.22% 4CL 150 3.06% DWF4/CYP90B1 113 2.3% NMT 97 1.98% F3'H/CYP75B 95 1.94% BR6OX2/CYP85A2 91 1.85% STR 90 1.83% CODM/T6ODM 87 1.77% CAD 79 1.61% H6H 77 1.57% CAS 71 1.45% LAC 69 1.41% SMT1/SMT2/SMT3 65 1.32% CYP71 65 1.32% CYP90D1 63 1.28% GES 62 1.26% TPS 62 1.26% TRI/TRII 56 1.14% 7DLH 48 0.98% CSE 48 0.98% BBE 46 0.94% HCT 46 0.94% GS 43 0.88% COMT 43 0.88% RAS 40 0.82% G8O/G8H 37 0.75% PYKS 36 0.73% F3'5'H/CYP75A 34 0.69% IFR 34 0.69% T16H 33 0.67% IO 33 0.67% CPD/CYP90A1 29 0.59% 16OMT 28 0.57% BR6OX1/CYP85A1 28 0.57% NCS 27 0.55% F5H/CYP84A 27 0.55% ANR 26 0.53% SGD 25 0.51% SLS 24 0.49% FNS 24 0.49% PMT 22 0.45% CCR 22 0.45% TAT 22 0.45% CYP51G1 22 0.45% PAL 21 0.43% 8HGO 19 0.39% COR 19 0.39% ROT3/CYP90C1 17 0.35% SQE 16 0.33% LAMT 14 0.29% CNMT 13 0.26% FPPS 13 0.26% GGPPS 12 0.24% ANS/LDOX 11 0.22% DFR 10 0.2% CCoAOMT 10 0.2% CHS 9 0.18% TYDC_DDC 8 0.16% MPO 8 0.16% ISY 8 0.16% HMGR 8 0.16% CPR 7 0.14% SQS/FDFT1 7 0.14% SMO1/SMO2 7 0.14% HPPR 6 0.12% DET2 6 0.12% AACT 6 0.12% DXS 6 0.12% MVK 5 0.1% CYP719 4 0.08% CYP80B1 4 0.08% CHI 4 0.08% DWF5 4 0.08% HMGS 4 0.08% MVD 4 0.08% TDC 3 0.06% 6OMT_4OMT_SOMT 3 0.06% ADC 3 0.06% FLS 3 0.06% HDR/IspH 3 0.06% MCT/IspD 3 0.06% DXR 3 0.06% XMT_MXMT_DXMT 2 0.04% ODC 2 0.04% FK 2 0.04% DWF1 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% HDS/IspG 2 0.04% GPPS 2 0.04% PMK 2 0.04% CYP80F1 1 0.02% CPI1 1 0.02% HYD1 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 546 21 BAHD (199) View species results
Alkaloid pathway 421 20 7DLGT (76) View species results
Phenylpropanoid pathway 419 11 POD (175) View species results
Flavonoid pathway 217 8 UFGT (147) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 128 12 CAS (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2015 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 351 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
gossypium_stocksii_Gsto_01G009900.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
gossypium_stocksii_Gsto_02G000210.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
gossypium_stocksii_Gsto_04G004710.1 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
gossypium_stocksii_Gsto_04G004720.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
gossypium_stocksii_Gsto_05G000660.1 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
gossypium_stocksii_Gsto_05G027100.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
gossypium_stocksii_Gsto_06G015270.1 Terpenoid FPPS low borderline FPPS__00006__sp_P49350_FPPS_ARTAN
gossypium_stocksii_Gsto_09G009370.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
gossypium_stocksii_Gsto_09G017260.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
gossypium_stocksii_Gsto_11G004100.1 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
gossypium_stocksii_Gsto_11G014370.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
gossypium_stocksii_Gsto_13G011160.1 Terpenoid FPPS low borderline FPPS__00006__sp_P49350_FPPS_ARTAN
gossypium_stocksii_Gsto_13G016970.2 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC