Gossypium stocksii (gossypium_stocksii)
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Imported from atlas release summary for Gossypium stocksii.
1880
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1880
Candidate Genes
C4H
7.34%
C3'H/CYP98A
6.32%
BAHD
5.4%
CYP76
4.1%
T3O
3.83%
IFS
3.83%
POD
3.67%
F3H
3.36%
Other Families
62.15%
More Families (98)
UGT
160
3.26%
7DLGT
158
3.22%
UFGT
158
3.22%
4CL
150
3.06%
DWF4/CYP90B1
113
2.3%
NMT
97
1.98%
F3'H/CYP75B
95
1.94%
BR6OX2/CYP85A2
91
1.85%
STR
90
1.83%
CODM/T6ODM
87
1.77%
CAD
79
1.61%
H6H
77
1.57%
CAS
71
1.45%
LAC
69
1.41%
SMT1/SMT2/SMT3
65
1.32%
CYP71
65
1.32%
CYP90D1
63
1.28%
GES
62
1.26%
TPS
62
1.26%
TRI/TRII
56
1.14%
7DLH
48
0.98%
CSE
48
0.98%
BBE
46
0.94%
HCT
46
0.94%
GS
43
0.88%
COMT
43
0.88%
RAS
40
0.82%
G8O/G8H
37
0.75%
PYKS
36
0.73%
F3'5'H/CYP75A
34
0.69%
IFR
34
0.69%
T16H
33
0.67%
IO
33
0.67%
CPD/CYP90A1
29
0.59%
16OMT
28
0.57%
BR6OX1/CYP85A1
28
0.57%
NCS
27
0.55%
F5H/CYP84A
27
0.55%
ANR
26
0.53%
SGD
25
0.51%
SLS
24
0.49%
FNS
24
0.49%
PMT
22
0.45%
CCR
22
0.45%
TAT
22
0.45%
CYP51G1
22
0.45%
PAL
21
0.43%
8HGO
19
0.39%
COR
19
0.39%
ROT3/CYP90C1
17
0.35%
SQE
16
0.33%
LAMT
14
0.29%
CNMT
13
0.26%
FPPS
13
0.26%
GGPPS
12
0.24%
ANS/LDOX
11
0.22%
DFR
10
0.2%
CCoAOMT
10
0.2%
CHS
9
0.18%
TYDC_DDC
8
0.16%
MPO
8
0.16%
ISY
8
0.16%
HMGR
8
0.16%
CPR
7
0.14%
SQS/FDFT1
7
0.14%
SMO1/SMO2
7
0.14%
HPPR
6
0.12%
DET2
6
0.12%
AACT
6
0.12%
DXS
6
0.12%
MVK
5
0.1%
CYP719
4
0.08%
CYP80B1
4
0.08%
CHI
4
0.08%
DWF5
4
0.08%
HMGS
4
0.08%
MVD
4
0.08%
TDC
3
0.06%
6OMT_4OMT_SOMT
3
0.06%
ADC
3
0.06%
FLS
3
0.06%
HDR/IspH
3
0.06%
MCT/IspD
3
0.06%
DXR
3
0.06%
XMT_MXMT_DXMT
2
0.04%
ODC
2
0.04%
FK
2
0.04%
DWF1
2
0.04%
DWF7
2
0.04%
MDS/IspF
2
0.04%
HDS/IspG
2
0.04%
GPPS
2
0.04%
PMK
2
0.04%
CYP80F1
1
0.02%
CPI1
1
0.02%
HYD1
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 546 | 21 | BAHD (199) | View species results |
| Alkaloid pathway | 421 | 20 | 7DLGT (76) | View species results |
| Phenylpropanoid pathway | 419 | 11 | POD (175) | View species results |
| Flavonoid pathway | 217 | 8 | UFGT (147) | View species results |
| Rosmarinic acid pathway | 149 | 7 | C4H (69) | View species results |
| Steroid pathway | 128 | 12 | CAS (60) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2015 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 351 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| gossypium_stocksii_Gsto_08G011820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_08G016030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_08G019170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_08G027630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_09G004490.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_09G005010.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_09G005040.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_09G011930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_09G012940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_09G014560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_09G015000.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_09G015270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_09G016020.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_09G018750.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_09G028860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_10G007230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_10G007260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_10G007930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_10G021930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_10G025620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_11G011450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_11G011460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_11G023360.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_11G024090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_11G024100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_11G025620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_11G036620.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_11G037250.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_11G039540.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_11G041190.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_12G000790.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_12G007990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_12G011320.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_12G012790.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_12G012810.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| gossypium_stocksii_Gsto_12G018010.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_13G002410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_13G011380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_stocksii_Gsto_13G024710.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_stocksii_Gsto_13G029230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |