PlantSME Plant secondary metabolism enzyme database

Gynandropsis gynandra (gynandropsis_gynandra)

Imported from atlas release summary for Gynandropsis gynandra.

1225
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 21.71% Phenylpropanoid pathway 21.47% Flavonoid pathway 10.53% Rosmarinic acid pathway 8.57% Steroid pathway 6.86%
Family Distribution
C3'H/CYP98A 6.29% C4H 6.25% BAHD 6.0% CYP76 4.26% POD 4.19% IFS 4.13% 4CL 3.19% T3O 3.16%
Other Families 62.54%
More Families (97)
UGT 92 2.97% NMT 90 2.9% 7DLGT 85 2.74% UFGT 79 2.55% DWF4/CYP90B1 79 2.55% BR6OX2/CYP85A2 75 2.42% F3H 61 1.97% F3'H/CYP75B 57 1.84% STR 56 1.81% CYP71 50 1.61% CAS 48 1.55% CSE 47 1.52% TRI/TRII 44 1.42% CODM/T6ODM 43 1.39% SMT1/SMT2/SMT3 41 1.32% SGD 39 1.26% IFR 38 1.23% PYKS 37 1.19% CAD 37 1.19% HCT 35 1.13% LAC 35 1.13% T16H 30 0.97% H6H 29 0.93% IO 28 0.9% COMT 28 0.9% RAS 26 0.84% SLS 25 0.81% TPS 24 0.77% GS 22 0.71% F5H/CYP84A 22 0.71% GES 21 0.68% G8O/G8H 21 0.68% CYP90D1 20 0.64% ANR 19 0.61% PMT 18 0.58% F3'5'H/CYP75A 18 0.58% FNS 18 0.58% TAT 18 0.58% CCR 17 0.55% BBE 16 0.52% 16OMT 15 0.48% CYP51G1 15 0.48% LAMT 14 0.45% DXS 14 0.45% 8HGO 13 0.42% FPPS 13 0.42% CNMT 12 0.39% NCS 11 0.35% CYP719 11 0.35% 7DLH 11 0.35% CPR 11 0.35% BR6OX1/CYP85A1 11 0.35% CPD/CYP90A1 11 0.35% ANS/LDOX 10 0.32% MPO 9 0.29% PAL 9 0.29% DWF5 9 0.29% GGPPS 9 0.29% COR 8 0.26% SQE 8 0.26% AACT 8 0.26% ROT3/CYP90C1 7 0.23% HMGR 7 0.23% CHS 6 0.19% DFR 6 0.19% CHI 6 0.19% SQS/FDFT1 6 0.19% MDS/IspF 6 0.19% MVK 6 0.19% CYP80B1 5 0.16% CCoAOMT 5 0.16% HPPR 5 0.16% DET2 5 0.16% ADC 4 0.13% TDC 4 0.13% DWF7 4 0.13% SMO1/SMO2 4 0.13% FLS 3 0.1% MVD 3 0.1% ISY 2 0.06% TYDC_DDC 2 0.06% DWF1 2 0.06% HYD1 2 0.06% DXR 2 0.06% PMK 2 0.06% IDI 2 0.06% HMGS 2 0.06% MCT/IspD 2 0.06% HDR/IspH 2 0.06% XMT_MXMT_DXMT 1 0.03% ODC 1 0.03% 6OMT_4OMT_SOMT 1 0.03% CYP80F1 1 0.03% FK 1 0.03% CPI1 1 0.03% HDS/IspG 1 0.03% CMK/IspE 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 378 19 BAHD (153) View species results
Alkaloid pathway 266 21 NMT (47) View species results
Phenylpropanoid pathway 263 11 POD (114) View species results
Flavonoid pathway 129 8 UFGT (76) View species results
Rosmarinic acid pathway 105 7 C4H (47) View species results
Steroid pathway 84 12 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1244 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 247 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
Reset
Gene Pathway Family Confidence Status Best Target
gynandropsis_gynandra_Gyn_10X_HIC_v5_00007302.mRNA1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
gynandropsis_gynandra_Gyn_10X_HIC_v5_00011732.mRNA1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
gynandropsis_gynandra_Gyn_10X_HIC_v5_00016331.mRNA1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
gynandropsis_gynandra_Gyn_10X_HIC_v5_00017666.mRNA1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
gynandropsis_gynandra_Gyn_10X_HIC_v5_00018206.mRNA1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
gynandropsis_gynandra_Gyn_10X_HIC_v5_00021041.mRNA1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
gynandropsis_gynandra_Gyn_10X_HIC_v5_00026909.mRNA1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
gynandropsis_gynandra_Gyn_10X_HIC_v5_00026910.mRNA1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO