Gynandropsis gynandra (gynandropsis_gynandra)
Imported from atlas release summary for Gynandropsis gynandra.
1225
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1225
Candidate Genes
C3'H/CYP98A
6.29%
C4H
6.25%
BAHD
6.0%
CYP76
4.26%
POD
4.19%
IFS
4.13%
4CL
3.19%
T3O
3.16%
Other Families
62.54%
More Families (97)
UGT
92
2.97%
NMT
90
2.9%
7DLGT
85
2.74%
UFGT
79
2.55%
DWF4/CYP90B1
79
2.55%
BR6OX2/CYP85A2
75
2.42%
F3H
61
1.97%
F3'H/CYP75B
57
1.84%
STR
56
1.81%
CYP71
50
1.61%
CAS
48
1.55%
CSE
47
1.52%
TRI/TRII
44
1.42%
CODM/T6ODM
43
1.39%
SMT1/SMT2/SMT3
41
1.32%
SGD
39
1.26%
IFR
38
1.23%
PYKS
37
1.19%
CAD
37
1.19%
HCT
35
1.13%
LAC
35
1.13%
T16H
30
0.97%
H6H
29
0.93%
IO
28
0.9%
COMT
28
0.9%
RAS
26
0.84%
SLS
25
0.81%
TPS
24
0.77%
GS
22
0.71%
F5H/CYP84A
22
0.71%
GES
21
0.68%
G8O/G8H
21
0.68%
CYP90D1
20
0.64%
ANR
19
0.61%
PMT
18
0.58%
F3'5'H/CYP75A
18
0.58%
FNS
18
0.58%
TAT
18
0.58%
CCR
17
0.55%
BBE
16
0.52%
16OMT
15
0.48%
CYP51G1
15
0.48%
LAMT
14
0.45%
DXS
14
0.45%
8HGO
13
0.42%
FPPS
13
0.42%
CNMT
12
0.39%
NCS
11
0.35%
CYP719
11
0.35%
7DLH
11
0.35%
CPR
11
0.35%
BR6OX1/CYP85A1
11
0.35%
CPD/CYP90A1
11
0.35%
ANS/LDOX
10
0.32%
MPO
9
0.29%
PAL
9
0.29%
DWF5
9
0.29%
GGPPS
9
0.29%
COR
8
0.26%
SQE
8
0.26%
AACT
8
0.26%
ROT3/CYP90C1
7
0.23%
HMGR
7
0.23%
CHS
6
0.19%
DFR
6
0.19%
CHI
6
0.19%
SQS/FDFT1
6
0.19%
MDS/IspF
6
0.19%
MVK
6
0.19%
CYP80B1
5
0.16%
CCoAOMT
5
0.16%
HPPR
5
0.16%
DET2
5
0.16%
ADC
4
0.13%
TDC
4
0.13%
DWF7
4
0.13%
SMO1/SMO2
4
0.13%
FLS
3
0.1%
MVD
3
0.1%
ISY
2
0.06%
TYDC_DDC
2
0.06%
DWF1
2
0.06%
HYD1
2
0.06%
DXR
2
0.06%
PMK
2
0.06%
IDI
2
0.06%
HMGS
2
0.06%
MCT/IspD
2
0.06%
HDR/IspH
2
0.06%
XMT_MXMT_DXMT
1
0.03%
ODC
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
CYP80F1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HDS/IspG
1
0.03%
CMK/IspE
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 378 | 19 | BAHD (153) | View species results |
| Alkaloid pathway | 266 | 21 | NMT (47) | View species results |
| Phenylpropanoid pathway | 263 | 11 | POD (114) | View species results |
| Flavonoid pathway | 129 | 8 | UFGT (76) | View species results |
| Rosmarinic acid pathway | 105 | 7 | C4H (47) | View species results |
| Steroid pathway | 84 | 12 | CAS (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1244 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 247 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00001566.mRNA1 | Terpenoid | FPPS | medium | pass | FPPS__00002__sp_K7W9N9_CPT6_SOLLC |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00003502.mRNA1 | Terpenoid | FPPS | medium | pass | FPPS__00006__sp_P49350_FPPS_ARTAN |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00008773.mRNA1 | Terpenoid | FPPS | medium | pass | FPPS__00006__sp_P49350_FPPS_ARTAN |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00017544.mRNA1 | Terpenoid | FPPS | medium | pass | FPPS__00002__sp_K7W9N9_CPT6_SOLLC |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00020517.mRNA1 | Terpenoid | FPPS | low | borderline | FPPS__00002__sp_K7W9N9_CPT6_SOLLC |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00021348.mRNA1 | Terpenoid | FPPS | medium | borderline | FPPS__00005__sp_P34802_GGPP1_ARATH |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00022241.mRNA1 | Terpenoid | FPPS | medium | pass | FPPS__00006__sp_P49350_FPPS_ARTAN |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00022686.mRNA1 | Terpenoid | FPPS | medium | pass | FPPS__00008__sp_Q4JHN6_FPS_PANGI |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00023266.mRNA1 | Terpenoid | FPPS | medium | borderline | FPPS__00011__sp_Q9SLG2_GGPP4_ARATH |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00024311.mRNA1 | Terpenoid | FPPS | medium | pass | FPPS__00008__sp_Q4JHN6_FPS_PANGI |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00026137.mRNA1 | Terpenoid | FPPS | medium | pass | FPPS__00008__sp_Q4JHN6_FPS_PANGI |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00027334.mRNA1 | Terpenoid | FPPS | low | borderline | FPPS__00008__sp_Q4JHN6_FPS_PANGI |
| gynandropsis_gynandra_Gyn_10X_HIC_v5_00027744.mRNA1 | Terpenoid | FPPS | medium | pass | FPPS__00008__sp_Q4JHN6_FPS_PANGI |