PlantSME Plant secondary metabolism enzyme database

Gynandropsis gynandra (gynandropsis_gynandra)

Imported from atlas release summary for Gynandropsis gynandra.

1225
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 21.71% Phenylpropanoid pathway 21.47% Flavonoid pathway 10.53% Rosmarinic acid pathway 8.57% Steroid pathway 6.86%
Family Distribution
C3'H/CYP98A 6.29% C4H 6.25% BAHD 6.0% CYP76 4.26% POD 4.19% IFS 4.13% 4CL 3.19% T3O 3.16%
Other Families 62.54%
More Families (97)
UGT 92 2.97% NMT 90 2.9% 7DLGT 85 2.74% UFGT 79 2.55% DWF4/CYP90B1 79 2.55% BR6OX2/CYP85A2 75 2.42% F3H 61 1.97% F3'H/CYP75B 57 1.84% STR 56 1.81% CYP71 50 1.61% CAS 48 1.55% CSE 47 1.52% TRI/TRII 44 1.42% CODM/T6ODM 43 1.39% SMT1/SMT2/SMT3 41 1.32% SGD 39 1.26% IFR 38 1.23% PYKS 37 1.19% CAD 37 1.19% HCT 35 1.13% LAC 35 1.13% T16H 30 0.97% H6H 29 0.93% IO 28 0.9% COMT 28 0.9% RAS 26 0.84% SLS 25 0.81% TPS 24 0.77% GS 22 0.71% F5H/CYP84A 22 0.71% GES 21 0.68% G8O/G8H 21 0.68% CYP90D1 20 0.64% ANR 19 0.61% PMT 18 0.58% F3'5'H/CYP75A 18 0.58% FNS 18 0.58% TAT 18 0.58% CCR 17 0.55% BBE 16 0.52% 16OMT 15 0.48% CYP51G1 15 0.48% LAMT 14 0.45% DXS 14 0.45% 8HGO 13 0.42% FPPS 13 0.42% CNMT 12 0.39% NCS 11 0.35% CYP719 11 0.35% 7DLH 11 0.35% CPR 11 0.35% BR6OX1/CYP85A1 11 0.35% CPD/CYP90A1 11 0.35% ANS/LDOX 10 0.32% MPO 9 0.29% PAL 9 0.29% DWF5 9 0.29% GGPPS 9 0.29% COR 8 0.26% SQE 8 0.26% AACT 8 0.26% ROT3/CYP90C1 7 0.23% HMGR 7 0.23% CHS 6 0.19% DFR 6 0.19% CHI 6 0.19% SQS/FDFT1 6 0.19% MDS/IspF 6 0.19% MVK 6 0.19% CYP80B1 5 0.16% CCoAOMT 5 0.16% HPPR 5 0.16% DET2 5 0.16% ADC 4 0.13% TDC 4 0.13% DWF7 4 0.13% SMO1/SMO2 4 0.13% FLS 3 0.1% MVD 3 0.1% ISY 2 0.06% TYDC_DDC 2 0.06% DWF1 2 0.06% HYD1 2 0.06% DXR 2 0.06% PMK 2 0.06% IDI 2 0.06% HMGS 2 0.06% MCT/IspD 2 0.06% HDR/IspH 2 0.06% XMT_MXMT_DXMT 1 0.03% ODC 1 0.03% 6OMT_4OMT_SOMT 1 0.03% CYP80F1 1 0.03% FK 1 0.03% CPI1 1 0.03% HDS/IspG 1 0.03% CMK/IspE 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 378 19 BAHD (153) View species results
Alkaloid pathway 266 21 NMT (47) View species results
Phenylpropanoid pathway 263 11 POD (114) View species results
Flavonoid pathway 129 8 UFGT (76) View species results
Rosmarinic acid pathway 105 7 C4H (47) View species results
Steroid pathway 84 12 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1244 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 247 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
gynandropsis_gynandra_Gyn_10X_HIC_v5_00000969.mRNA1 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00001050.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
gynandropsis_gynandra_Gyn_10X_HIC_v5_00001826.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00001927.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00001963.mRNA1 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
gynandropsis_gynandra_Gyn_10X_HIC_v5_00002034.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00002378.mRNA1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00003148.mRNA1 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00003320.mRNA1 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00003699.mRNA1 Alkaloid NMT low borderline NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00003728.mRNA1 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00003951.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00004765.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00005193.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00005442.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00005590.mRNA1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00005656.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00006232.mRNA1 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00007921.mRNA1 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
gynandropsis_gynandra_Gyn_10X_HIC_v5_00008280.mRNA1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00008424.mRNA1 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
gynandropsis_gynandra_Gyn_10X_HIC_v5_00008535.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00008934.mRNA1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00008995.mRNA1 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00009415.mRNA1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00009720.mRNA1 Alkaloid NMT low borderline NMT__00030__sp_Q43088_RBCMT_PEA
gynandropsis_gynandra_Gyn_10X_HIC_v5_00009777.mRNA1 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00009831.mRNA1 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00010290.mRNA1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00010471.mRNA1 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00010649.mRNA1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00010940.mRNA1 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00011399.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00012890.mRNA1 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
gynandropsis_gynandra_Gyn_10X_HIC_v5_00013641.mRNA1 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00013791.mRNA1 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00013826.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00014547.mRNA1 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00015400.mRNA1 Alkaloid NMT low borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
gynandropsis_gynandra_Gyn_10X_HIC_v5_00016036.mRNA1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00017707.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00017709.mRNA1 Alkaloid NMT medium borderline NMT__00062__sp_Q9SCP7_NAMT1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00017713.mRNA1 Alkaloid NMT medium pass NMT__00062__sp_Q9SCP7_NAMT1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00017872.mRNA1 Alkaloid NMT low borderline NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00018073.mRNA1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00018189.mRNA1 Alkaloid NMT low borderline NMT__00030__sp_Q43088_RBCMT_PEA
gynandropsis_gynandra_Gyn_10X_HIC_v5_00018557.mRNA1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00019166.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
gynandropsis_gynandra_Gyn_10X_HIC_v5_00019658.mRNA1 Alkaloid NMT low borderline NMT__00040__sp_Q84WW6_ASHH1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00019680.mRNA1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH