PlantSME Plant secondary metabolism enzyme database

Gynandropsis gynandra (gynandropsis_gynandra)

Imported from atlas release summary for Gynandropsis gynandra.

1225
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 21.71% Phenylpropanoid pathway 21.47% Flavonoid pathway 10.53% Rosmarinic acid pathway 8.57% Steroid pathway 6.86%
Family Distribution
C3'H/CYP98A 6.29% C4H 6.25% BAHD 6.0% CYP76 4.26% POD 4.19% IFS 4.13% 4CL 3.19% T3O 3.16%
Other Families 62.54%
More Families (97)
UGT 92 2.97% NMT 90 2.9% 7DLGT 85 2.74% UFGT 79 2.55% DWF4/CYP90B1 79 2.55% BR6OX2/CYP85A2 75 2.42% F3H 61 1.97% F3'H/CYP75B 57 1.84% STR 56 1.81% CYP71 50 1.61% CAS 48 1.55% CSE 47 1.52% TRI/TRII 44 1.42% CODM/T6ODM 43 1.39% SMT1/SMT2/SMT3 41 1.32% SGD 39 1.26% IFR 38 1.23% PYKS 37 1.19% CAD 37 1.19% HCT 35 1.13% LAC 35 1.13% T16H 30 0.97% H6H 29 0.93% IO 28 0.9% COMT 28 0.9% RAS 26 0.84% SLS 25 0.81% TPS 24 0.77% GS 22 0.71% F5H/CYP84A 22 0.71% GES 21 0.68% G8O/G8H 21 0.68% CYP90D1 20 0.64% ANR 19 0.61% PMT 18 0.58% F3'5'H/CYP75A 18 0.58% FNS 18 0.58% TAT 18 0.58% CCR 17 0.55% BBE 16 0.52% 16OMT 15 0.48% CYP51G1 15 0.48% LAMT 14 0.45% DXS 14 0.45% 8HGO 13 0.42% FPPS 13 0.42% CNMT 12 0.39% NCS 11 0.35% CYP719 11 0.35% 7DLH 11 0.35% CPR 11 0.35% BR6OX1/CYP85A1 11 0.35% CPD/CYP90A1 11 0.35% ANS/LDOX 10 0.32% MPO 9 0.29% PAL 9 0.29% DWF5 9 0.29% GGPPS 9 0.29% COR 8 0.26% SQE 8 0.26% AACT 8 0.26% ROT3/CYP90C1 7 0.23% HMGR 7 0.23% CHS 6 0.19% DFR 6 0.19% CHI 6 0.19% SQS/FDFT1 6 0.19% MDS/IspF 6 0.19% MVK 6 0.19% CYP80B1 5 0.16% CCoAOMT 5 0.16% HPPR 5 0.16% DET2 5 0.16% ADC 4 0.13% TDC 4 0.13% DWF7 4 0.13% SMO1/SMO2 4 0.13% FLS 3 0.1% MVD 3 0.1% ISY 2 0.06% TYDC_DDC 2 0.06% DWF1 2 0.06% HYD1 2 0.06% DXR 2 0.06% PMK 2 0.06% IDI 2 0.06% HMGS 2 0.06% MCT/IspD 2 0.06% HDR/IspH 2 0.06% XMT_MXMT_DXMT 1 0.03% ODC 1 0.03% 6OMT_4OMT_SOMT 1 0.03% CYP80F1 1 0.03% FK 1 0.03% CPI1 1 0.03% HDS/IspG 1 0.03% CMK/IspE 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 378 19 BAHD (153) View species results
Alkaloid pathway 266 21 NMT (47) View species results
Phenylpropanoid pathway 263 11 POD (114) View species results
Flavonoid pathway 129 8 UFGT (76) View species results
Rosmarinic acid pathway 105 7 C4H (47) View species results
Steroid pathway 84 12 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1244 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 247 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
gynandropsis_gynandra_Gyn_10X_HIC_v5_00020478.mRNA1 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00020618.mRNA1 Alkaloid NMT low borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
gynandropsis_gynandra_Gyn_10X_HIC_v5_00020710.mRNA1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00020757.mRNA1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00020808.mRNA1 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
gynandropsis_gynandra_Gyn_10X_HIC_v5_00021611.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00021906.mRNA1 Alkaloid NMT low borderline NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00022214.mRNA1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
gynandropsis_gynandra_Gyn_10X_HIC_v5_00022215.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00022586.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00022633.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00022639.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00022640.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00022794.mRNA1 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00022826.mRNA1 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00023436.mRNA1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00023641.mRNA1 Alkaloid NMT medium pass NMT__00050__sp_Q944H0_PEAM2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00023643.mRNA1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00023645.mRNA1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
gynandropsis_gynandra_Gyn_10X_HIC_v5_00024516.mRNA1 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
gynandropsis_gynandra_Gyn_10X_HIC_v5_00024750.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00026086.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00027152.mRNA1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00027473.mRNA1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00027833.mRNA1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00027930.mRNA1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
gynandropsis_gynandra_Gyn_10X_HIC_v5_00028099.mRNA1 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00028108.mRNA1 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00028377.mRNA1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00028724.mRNA1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00028799.mRNA1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00028847.mRNA1 Alkaloid NMT low borderline NMT__00034__sp_Q5VN06_CLF_ORYSJ
gynandropsis_gynandra_Gyn_10X_HIC_v5_00028932.mRNA1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00029873.mRNA1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00030059.mRNA1 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
gynandropsis_gynandra_Gyn_10X_HIC_v5_00030159.mRNA1 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00030276.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00030301.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00030507.mRNA1 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
gynandropsis_gynandra_Gyn_10X_HIC_v5_00030824.mRNA1 Alkaloid NMT low borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR