PlantSME Plant secondary metabolism enzyme database

Gypsophila paniculata (gypsophila_paniculata)

Imported from atlas release summary for Gypsophila paniculata.

1071
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.07% Phenylpropanoid pathway 22.88% Alkaloid pathway 19.33% Flavonoid pathway 14.38% Rosmarinic acid pathway 8.5% Steroid pathway 4.86%
Family Distribution
BAHD 6.96% POD 5.51% C3'H/CYP98A 5.07% C4H 5.0% UGT 4.15% 7DLGT 3.96% UFGT 3.96% 4CL 3.77%
Other Families 61.62%
More Families (95)
F3H 93 3.44% CYP76 83 3.07% IFS 76 2.81% NMT 72 2.66% T3O 69 2.55% CODM/T6ODM 63 2.33% F3'H/CYP75B 52 1.92% DWF4/CYP90B1 50 1.85% STR 49 1.81% H6H 49 1.81% BR6OX2/CYP85A2 49 1.81% RAS 39 1.44% SMT1/SMT2/SMT3 38 1.41% TRI/TRII 35 1.3% HCT 34 1.26% PYKS 31 1.15% CAD 30 1.11% CSE 29 1.07% CYP71 29 1.07% IFR 27 1.0% LAC 27 1.0% COMT 25 0.93% PMT 23 0.85% SGD 22 0.81% CAS 22 0.81% BBE 20 0.74% 7DLH 20 0.74% CYP90D1 20 0.74% G8O/G8H 19 0.7% GS 18 0.67% ANS/LDOX 18 0.67% T16H 17 0.63% TPS 17 0.63% GES 16 0.59% FNS 16 0.59% CCR 16 0.59% TAT 16 0.59% IO 15 0.56% ANR 15 0.56% FPPS 15 0.56% F5H/CYP84A 14 0.52% SLS 13 0.48% 16OMT 13 0.48% F3'5'H/CYP75A 13 0.48% CYP51G1 13 0.48% PAL 12 0.44% NCS 10 0.37% CHS 10 0.37% DFR 10 0.37% CPD/CYP90A1 10 0.37% BR6OX1/CYP85A1 9 0.33% COR 8 0.3% 8HGO 8 0.3% CCoAOMT 8 0.3% CPR 8 0.3% ROT3/CYP90C1 8 0.3% CNMT 7 0.26% SQS/FDFT1 7 0.26% AACT 7 0.26% CYP719 6 0.22% ISY 6 0.22% HPPR 6 0.22% LAMT 5 0.19% FLS 5 0.19% CHI 5 0.19% SMO1/SMO2 5 0.19% MPO 4 0.15% DET2 4 0.15% DWF7 4 0.15% GGPPS 4 0.15% DXS 4 0.15% MVD 4 0.15% DWF1 3 0.11% SQE 3 0.11% HMGS 3 0.11% GPPS 3 0.11% HMGR 3 0.11% CYP80F1 2 0.07% 6OMT_4OMT_SOMT 2 0.07% CYP80B1 2 0.07% TDC 2 0.07% FK 2 0.07% IDI 2 0.07% PMK 2 0.07% CMK/IspE 2 0.07% ADC 1 0.04% TYDC_DDC 1 0.04% CPI1 1 0.04% DWF5 1 0.04% MCT/IspD 1 0.04% MVK 1 0.04% MDS/IspF 1 0.04% DXR 1 0.04% HDS/IspG 1 0.04% HDR/IspH 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 322 20 BAHD (134) View species results
Phenylpropanoid pathway 245 11 POD (128) View species results
Alkaloid pathway 207 19 7DLGT (32) View species results
Flavonoid pathway 154 11 UFGT (99) View species results
Rosmarinic acid pathway 91 7 C4H (28) View species results
Steroid pathway 52 10 SMT1/SMT2/SMT3 (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 861 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
gypsophila_paniculata_Gpan02g00453.m1 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
gypsophila_paniculata_Gpan05g00389.m1 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
gypsophila_paniculata_Gpan06g00298.m1 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
gypsophila_paniculata_Gpan10g00337.m1 Flavonoid CHS low borderline CHS__00011__sp_Q9FUB7_CHSY_HYPAN
gypsophila_paniculata_Gpan12g00173.m1 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
gypsophila_paniculata_Gpan14g00553.m1 Flavonoid CHS medium pass CHS__00004__sp_C6KI62_CHSL1_CANSA
gypsophila_paniculata_Gpan14g00554.m1 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
gypsophila_paniculata_Gpan15g00473.m1 Flavonoid CHS medium pass CHS__00004__sp_C6KI62_CHSL1_CANSA
gypsophila_paniculata_Gpan16g00019.m1 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
gypsophila_paniculata_Gpan16g00463.m1 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID