PlantSME Plant secondary metabolism enzyme database

Gypsophila paniculata (gypsophila_paniculata)

Imported from atlas release summary for Gypsophila paniculata.

1071
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.07% Phenylpropanoid pathway 22.88% Alkaloid pathway 19.33% Flavonoid pathway 14.38% Rosmarinic acid pathway 8.5% Steroid pathway 4.86%
Family Distribution
BAHD 6.96% POD 5.51% C3'H/CYP98A 5.07% C4H 5.0% UGT 4.15% 7DLGT 3.96% UFGT 3.96% 4CL 3.77%
Other Families 61.62%
More Families (95)
F3H 93 3.44% CYP76 83 3.07% IFS 76 2.81% NMT 72 2.66% T3O 69 2.55% CODM/T6ODM 63 2.33% F3'H/CYP75B 52 1.92% DWF4/CYP90B1 50 1.85% STR 49 1.81% H6H 49 1.81% BR6OX2/CYP85A2 49 1.81% RAS 39 1.44% SMT1/SMT2/SMT3 38 1.41% TRI/TRII 35 1.3% HCT 34 1.26% PYKS 31 1.15% CAD 30 1.11% CSE 29 1.07% CYP71 29 1.07% IFR 27 1.0% LAC 27 1.0% COMT 25 0.93% PMT 23 0.85% SGD 22 0.81% CAS 22 0.81% BBE 20 0.74% 7DLH 20 0.74% CYP90D1 20 0.74% G8O/G8H 19 0.7% GS 18 0.67% ANS/LDOX 18 0.67% T16H 17 0.63% TPS 17 0.63% GES 16 0.59% FNS 16 0.59% CCR 16 0.59% TAT 16 0.59% IO 15 0.56% ANR 15 0.56% FPPS 15 0.56% F5H/CYP84A 14 0.52% SLS 13 0.48% 16OMT 13 0.48% F3'5'H/CYP75A 13 0.48% CYP51G1 13 0.48% PAL 12 0.44% NCS 10 0.37% CHS 10 0.37% DFR 10 0.37% CPD/CYP90A1 10 0.37% BR6OX1/CYP85A1 9 0.33% COR 8 0.3% 8HGO 8 0.3% CCoAOMT 8 0.3% CPR 8 0.3% ROT3/CYP90C1 8 0.3% CNMT 7 0.26% SQS/FDFT1 7 0.26% AACT 7 0.26% CYP719 6 0.22% ISY 6 0.22% HPPR 6 0.22% LAMT 5 0.19% FLS 5 0.19% CHI 5 0.19% SMO1/SMO2 5 0.19% MPO 4 0.15% DET2 4 0.15% DWF7 4 0.15% GGPPS 4 0.15% DXS 4 0.15% MVD 4 0.15% DWF1 3 0.11% SQE 3 0.11% HMGS 3 0.11% GPPS 3 0.11% HMGR 3 0.11% CYP80F1 2 0.07% 6OMT_4OMT_SOMT 2 0.07% CYP80B1 2 0.07% TDC 2 0.07% FK 2 0.07% IDI 2 0.07% PMK 2 0.07% CMK/IspE 2 0.07% ADC 1 0.04% TYDC_DDC 1 0.04% CPI1 1 0.04% DWF5 1 0.04% MCT/IspD 1 0.04% MVK 1 0.04% MDS/IspF 1 0.04% DXR 1 0.04% HDS/IspG 1 0.04% HDR/IspH 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 322 20 BAHD (134) View species results
Phenylpropanoid pathway 245 11 POD (128) View species results
Alkaloid pathway 207 19 7DLGT (32) View species results
Flavonoid pathway 154 11 UFGT (99) View species results
Rosmarinic acid pathway 91 7 C4H (28) View species results
Steroid pathway 52 10 SMT1/SMT2/SMT3 (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 861 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status Best Target
gypsophila_paniculata_Gpan04g01137.m1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
gypsophila_paniculata_Gpan08g01662.m1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
gypsophila_paniculata_Gpan11g00834.m1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
gypsophila_paniculata_Gpan15g00940.m1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
gypsophila_paniculata_Gpan16g01012.m1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO