PlantSME Plant secondary metabolism enzyme database

Hedwigia ciliata (hedwigia_ciliata)

Imported from atlas release summary for Hedwigia ciliata.

627
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.2% Terpenoid pathway 23.44% Alkaloid pathway 20.57% Flavonoid pathway 14.04% Rosmarinic acid pathway 10.37% Steroid pathway 6.38%
Family Distribution
C4H 6.57% POD 5.36% C3'H/CYP98A 5.3% BAHD 5.23% 4CL 4.98% CYP76 4.59% NMT 3.77% PAL 3.25%
Other Families 60.94%
More Families (96)
IFS 39 2.49% STR 36 2.3% F3'H/CYP75B 36 2.3% PYKS 35 2.23% BR6OX2/CYP85A2 35 2.23% GS 34 2.17% F3H 34 2.17% IFR 32 2.04% T3O 28 1.79% UGT 28 1.79% IO 27 1.72% DWF4/CYP90B1 25 1.6% CODM/T6ODM 24 1.53% UFGT 24 1.53% CHS 24 1.53% 7DLGT 23 1.47% CAD 21 1.34% CYP71 21 1.34% TRI/TRII 17 1.08% G8O/G8H 16 1.02% H6H 15 0.96% SMT1/SMT2/SMT3 15 0.96% T16H 14 0.89% COMT 14 0.89% F3'5'H/CYP75A 13 0.83% HCT 13 0.83% CAS 13 0.83% LAC 12 0.77% CPD/CYP90A1 11 0.7% CSE 9 0.57% RAS 9 0.57% SLS 8 0.51% NCS 8 0.51% COR 8 0.51% DWF5 8 0.51% SGD 7 0.45% PMT 7 0.45% 7DLH 7 0.45% 16OMT 7 0.45% ANR 7 0.45% F5H/CYP84A 7 0.45% CCR 7 0.45% CYP90D1 7 0.45% CNMT 6 0.38% FNS 6 0.38% DFR 6 0.38% CPR 6 0.38% CYP51G1 6 0.38% SQS/FDFT1 6 0.38% TDC 5 0.32% 8HGO 5 0.32% TAT 5 0.32% FPPS 5 0.32% AACT 5 0.32% TPS 5 0.32% GGPPS 5 0.32% MPO 4 0.26% CYP719 4 0.26% GES 4 0.26% LAMT 4 0.26% CHI 4 0.26% DET2 4 0.26% ROT3/CYP90C1 4 0.26% MVK 4 0.26% DXS 4 0.26% 6OMT_4OMT_SOMT 3 0.19% BBE 3 0.19% ISY 3 0.19% ANS/LDOX 3 0.19% FLS 3 0.19% HPPR 3 0.19% BR6OX1/CYP85A1 3 0.19% HDR/IspH 3 0.19% HMGS 3 0.19% MVD 3 0.19% HDS/IspG 3 0.19% CYP80B1 2 0.13% XMT_MXMT_DXMT 2 0.13% ADC 2 0.13% TYDC_DDC 2 0.13% CCoAOMT 2 0.13% HYD1 2 0.13% SQE 2 0.13% SMO1/SMO2 2 0.13% IDI 2 0.13% MCT/IspD 2 0.13% CYP80F1 1 0.06% CPI1 1 0.06% DWF7 1 0.06% DWF1 1 0.06% FK 1 0.06% DXR 1 0.06% MDS/IspF 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 158 12 POD (78) View species results
Terpenoid pathway 147 19 BAHD (55) View species results
Alkaloid pathway 129 18 NMT (27) View species results
Flavonoid pathway 88 12 CHS (24) View species results
Rosmarinic acid pathway 65 7 C4H (24) View species results
Steroid pathway 40 14 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 572 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 104 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
Hcilscaffold_10000960 Phenylpropanoid CAD low borderline
Hcilscaffold_100044220 Phenylpropanoid CAD low borderline
Hcilscaffold_10009720 Phenylpropanoid CAD low borderline
Hcilscaffold_10032960 Phenylpropanoid CAD medium pass
Hcilscaffold_10032980 Phenylpropanoid CAD medium pass
Hcilscaffold_20059850 Phenylpropanoid CAD medium borderline
Hcilscaffold_30077740 Phenylpropanoid CAD low borderline
Hcilscaffold_30078110 Phenylpropanoid CAD medium pass
Hcilscaffold_30082130 Phenylpropanoid CAD low borderline
Hcilscaffold_40096430 Phenylpropanoid CAD low borderline
Hcilscaffold_60137460 Phenylpropanoid CAD medium borderline
Hcilscaffold_60137470 Phenylpropanoid CAD medium borderline
Hcilscaffold_60138200 Phenylpropanoid CAD medium pass
Hcilscaffold_70155480 Phenylpropanoid CAD low borderline
Hcilscaffold_70166410 Phenylpropanoid CAD low borderline
Hcilscaffold_70186470 Phenylpropanoid CAD low borderline
Hcilscaffold_70198740 Phenylpropanoid CAD medium pass
Hcilscaffold_70199780 Phenylpropanoid CAD medium pass
Hcilscaffold_90239770 Phenylpropanoid CAD low borderline
Hcilscaffold_90239780 Phenylpropanoid CAD low borderline
Hcilscaffold_90254590 Phenylpropanoid CAD medium borderline