Hedwigia ciliata (hedwigia_ciliata)
Imported from atlas release summary for Hedwigia ciliata.
627
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
627
Candidate Genes
C4H
6.57%
POD
5.36%
C3'H/CYP98A
5.3%
BAHD
5.23%
4CL
4.98%
CYP76
4.59%
NMT
3.77%
PAL
3.25%
Other Families
60.94%
More Families (96)
IFS
39
2.49%
STR
36
2.3%
F3'H/CYP75B
36
2.3%
PYKS
35
2.23%
BR6OX2/CYP85A2
35
2.23%
GS
34
2.17%
F3H
34
2.17%
IFR
32
2.04%
T3O
28
1.79%
UGT
28
1.79%
IO
27
1.72%
DWF4/CYP90B1
25
1.6%
CODM/T6ODM
24
1.53%
UFGT
24
1.53%
CHS
24
1.53%
7DLGT
23
1.47%
CAD
21
1.34%
CYP71
21
1.34%
TRI/TRII
17
1.08%
G8O/G8H
16
1.02%
H6H
15
0.96%
SMT1/SMT2/SMT3
15
0.96%
T16H
14
0.89%
COMT
14
0.89%
F3'5'H/CYP75A
13
0.83%
HCT
13
0.83%
CAS
13
0.83%
LAC
12
0.77%
CPD/CYP90A1
11
0.7%
CSE
9
0.57%
RAS
9
0.57%
SLS
8
0.51%
NCS
8
0.51%
COR
8
0.51%
DWF5
8
0.51%
SGD
7
0.45%
PMT
7
0.45%
7DLH
7
0.45%
16OMT
7
0.45%
ANR
7
0.45%
F5H/CYP84A
7
0.45%
CCR
7
0.45%
CYP90D1
7
0.45%
CNMT
6
0.38%
FNS
6
0.38%
DFR
6
0.38%
CPR
6
0.38%
CYP51G1
6
0.38%
SQS/FDFT1
6
0.38%
TDC
5
0.32%
8HGO
5
0.32%
TAT
5
0.32%
FPPS
5
0.32%
AACT
5
0.32%
TPS
5
0.32%
GGPPS
5
0.32%
MPO
4
0.26%
CYP719
4
0.26%
GES
4
0.26%
LAMT
4
0.26%
CHI
4
0.26%
DET2
4
0.26%
ROT3/CYP90C1
4
0.26%
MVK
4
0.26%
DXS
4
0.26%
6OMT_4OMT_SOMT
3
0.19%
BBE
3
0.19%
ISY
3
0.19%
ANS/LDOX
3
0.19%
FLS
3
0.19%
HPPR
3
0.19%
BR6OX1/CYP85A1
3
0.19%
HDR/IspH
3
0.19%
HMGS
3
0.19%
MVD
3
0.19%
HDS/IspG
3
0.19%
CYP80B1
2
0.13%
XMT_MXMT_DXMT
2
0.13%
ADC
2
0.13%
TYDC_DDC
2
0.13%
CCoAOMT
2
0.13%
HYD1
2
0.13%
SQE
2
0.13%
SMO1/SMO2
2
0.13%
IDI
2
0.13%
MCT/IspD
2
0.13%
CYP80F1
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
DWF1
1
0.06%
FK
1
0.06%
DXR
1
0.06%
MDS/IspF
1
0.06%
CMK/IspE
1
0.06%
HMGR
1
0.06%
PMK
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 158 | 12 | POD (78) | View species results |
| Terpenoid pathway | 147 | 19 | BAHD (55) | View species results |
| Alkaloid pathway | 129 | 18 | NMT (27) | View species results |
| Flavonoid pathway | 88 | 12 | CHS (24) | View species results |
| Rosmarinic acid pathway | 65 | 7 | C4H (24) | View species results |
| Steroid pathway | 40 | 14 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 572 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 104 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Hcilscaffold_10000300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_100043280 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_10007750 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_10023750 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_10024510 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hcilscaffold_10027120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_10032430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_10034090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_20054910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_20059160 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hcilscaffold_20061840 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_20065080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_20066610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_20071230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_210071970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_30075980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_30080760 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hcilscaffold_30084360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_30087680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_30088460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_30089430 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hcilscaffold_40091850 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hcilscaffold_40108900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_50121950 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_50132810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_60152870 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_60154350 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_70180940 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_70180960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_70188030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_70193130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_80216730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_90224740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_90224750 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_90225710 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hcilscaffold_90255290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |