PlantSME Plant secondary metabolism enzyme database

Hedwigia ciliata (hedwigia_ciliata)

Imported from atlas release summary for Hedwigia ciliata.

627
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.2% Terpenoid pathway 23.44% Alkaloid pathway 20.57% Flavonoid pathway 14.04% Rosmarinic acid pathway 10.37% Steroid pathway 6.38%
Family Distribution
C4H 6.57% POD 5.36% C3'H/CYP98A 5.3% BAHD 5.23% 4CL 4.98% CYP76 4.59% NMT 3.77% PAL 3.25%
Other Families 60.94%
More Families (96)
IFS 39 2.49% STR 36 2.3% F3'H/CYP75B 36 2.3% PYKS 35 2.23% BR6OX2/CYP85A2 35 2.23% GS 34 2.17% F3H 34 2.17% IFR 32 2.04% T3O 28 1.79% UGT 28 1.79% IO 27 1.72% DWF4/CYP90B1 25 1.6% CODM/T6ODM 24 1.53% UFGT 24 1.53% CHS 24 1.53% 7DLGT 23 1.47% CAD 21 1.34% CYP71 21 1.34% TRI/TRII 17 1.08% G8O/G8H 16 1.02% H6H 15 0.96% SMT1/SMT2/SMT3 15 0.96% T16H 14 0.89% COMT 14 0.89% F3'5'H/CYP75A 13 0.83% HCT 13 0.83% CAS 13 0.83% LAC 12 0.77% CPD/CYP90A1 11 0.7% CSE 9 0.57% RAS 9 0.57% SLS 8 0.51% NCS 8 0.51% COR 8 0.51% DWF5 8 0.51% SGD 7 0.45% PMT 7 0.45% 7DLH 7 0.45% 16OMT 7 0.45% ANR 7 0.45% F5H/CYP84A 7 0.45% CCR 7 0.45% CYP90D1 7 0.45% CNMT 6 0.38% FNS 6 0.38% DFR 6 0.38% CPR 6 0.38% CYP51G1 6 0.38% SQS/FDFT1 6 0.38% TDC 5 0.32% 8HGO 5 0.32% TAT 5 0.32% FPPS 5 0.32% AACT 5 0.32% TPS 5 0.32% GGPPS 5 0.32% MPO 4 0.26% CYP719 4 0.26% GES 4 0.26% LAMT 4 0.26% CHI 4 0.26% DET2 4 0.26% ROT3/CYP90C1 4 0.26% MVK 4 0.26% DXS 4 0.26% 6OMT_4OMT_SOMT 3 0.19% BBE 3 0.19% ISY 3 0.19% ANS/LDOX 3 0.19% FLS 3 0.19% HPPR 3 0.19% BR6OX1/CYP85A1 3 0.19% HDR/IspH 3 0.19% HMGS 3 0.19% MVD 3 0.19% HDS/IspG 3 0.19% CYP80B1 2 0.13% XMT_MXMT_DXMT 2 0.13% ADC 2 0.13% TYDC_DDC 2 0.13% CCoAOMT 2 0.13% HYD1 2 0.13% SQE 2 0.13% SMO1/SMO2 2 0.13% IDI 2 0.13% MCT/IspD 2 0.13% CYP80F1 1 0.06% CPI1 1 0.06% DWF7 1 0.06% DWF1 1 0.06% FK 1 0.06% DXR 1 0.06% MDS/IspF 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 158 12 POD (78) View species results
Terpenoid pathway 147 19 BAHD (55) View species results
Alkaloid pathway 129 18 NMT (27) View species results
Flavonoid pathway 88 12 CHS (24) View species results
Rosmarinic acid pathway 65 7 C4H (24) View species results
Steroid pathway 40 14 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 572 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 104 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Hcilscaffold_10013380 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_10020470 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_10024940 Steroid DWF4/CYP90B1 medium borderline
Hcilscaffold_10031620 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_20059110 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_20063420 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_20066060 Steroid DWF4/CYP90B1 medium borderline
Hcilscaffold_20068070 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_20068580 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_20071640 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_50129740 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_60141620 Steroid DWF4/CYP90B1 medium borderline
Hcilscaffold_60146660 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_70158390 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_70172320 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_70176800 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_70180810 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_70181860 Steroid DWF4/CYP90B1 medium borderline
Hcilscaffold_70186590 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_70202940 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_80211880 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_80215770 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_80221910 Steroid DWF4/CYP90B1 medium borderline
Hcilscaffold_90244050 Steroid DWF4/CYP90B1 low borderline
Hcilscaffold_90251140 Steroid DWF4/CYP90B1 low borderline