PlantSME Plant secondary metabolism enzyme database

Hedwigia ciliata (hedwigia_ciliata)

Imported from atlas release summary for Hedwigia ciliata.

849
Candidate Protein Records
627
Pathway-Level Records
1567
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 25.2% Terpenoid pathway 23.44% Alkaloid pathway 20.57% Flavonoid pathway 14.04% Rosmarinic acid pathway 10.37% Steroid pathway 6.38%
Family Distribution
C4H 6.57% POD 5.36% C3'H/CYP98A 5.3% BAHD 5.23% 4CL 4.98% CYP76 4.59% NMT 3.77% PAL 3.25%
Other Families 60.94%
More Families (96)
IFS 39 2.49% STR 36 2.3% F3'H/CYP75B 36 2.3% PYKS 35 2.23% BR6OX2/CYP85A2 35 2.23% GS 34 2.17% F3H 34 2.17% IFR 32 2.04% T3O 28 1.79% UGT 28 1.79% IO 27 1.72% DWF4/CYP90B1 25 1.6% CODM/T6ODM 24 1.53% UFGT 24 1.53% CHS 24 1.53% 7DLGT 23 1.47% CAD 21 1.34% CYP71 21 1.34% TRI/TRII 17 1.08% G8O/G8H 16 1.02% H6H 15 0.96% SMT1/SMT2/SMT3 15 0.96% T16H 14 0.89% COMT 14 0.89% F3'5'H/CYP75A 13 0.83% HCT 13 0.83% CAS 13 0.83% LAC 12 0.77% CPD/CYP90A1 11 0.7% CSE 9 0.57% RAS 9 0.57% SLS 8 0.51% NCS 8 0.51% COR 8 0.51% DWF5 8 0.51% SGD 7 0.45% PMT 7 0.45% 7DLH 7 0.45% 16OMT 7 0.45% ANR 7 0.45% F5H/CYP84A 7 0.45% CCR 7 0.45% CYP90D1 7 0.45% CNMT 6 0.38% FNS 6 0.38% DFR 6 0.38% CPR 6 0.38% CYP51G1 6 0.38% SQS/FDFT1 6 0.38% TDC 5 0.32% 8HGO 5 0.32% TAT 5 0.32% FPPS 5 0.32% AACT 5 0.32% TPS 5 0.32% GGPPS 5 0.32% MPO 4 0.26% CYP719 4 0.26% GES 4 0.26% LAMT 4 0.26% CHI 4 0.26% DET2 4 0.26% ROT3/CYP90C1 4 0.26% MVK 4 0.26% DXS 4 0.26% 6OMT_4OMT_SOMT 3 0.19% BBE 3 0.19% ISY 3 0.19% ANS/LDOX 3 0.19% FLS 3 0.19% HPPR 3 0.19% BR6OX1/CYP85A1 3 0.19% HDR/IspH 3 0.19% HMGS 3 0.19% MVD 3 0.19% HDS/IspG 3 0.19% CYP80B1 2 0.13% XMT_MXMT_DXMT 2 0.13% ADC 2 0.13% TYDC_DDC 2 0.13% CCoAOMT 2 0.13% HYD1 2 0.13% SQE 2 0.13% SMO1/SMO2 2 0.13% IDI 2 0.13% MCT/IspD 2 0.13% CYP80F1 1 0.06% CPI1 1 0.06% DWF7 1 0.06% DWF1 1 0.06% FK 1 0.06% DXR 1 0.06% MDS/IspF 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 158 12 POD (78) View species results
Terpenoid pathway 147 19 BAHD (55) View species results
Alkaloid pathway 129 18 NMT (27) View species results
Flavonoid pathway 88 12 CHS (24) View species results
Rosmarinic acid pathway 65 7 C4H (24) View species results
Steroid pathway 40 14 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 572 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 104 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
Hcilscaffold_60148340 Terpenoid UGT medium pass UGT__00076__sp_Q8L7M0_TUN_ARATH
Hcilscaffold_70159750 Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
Hcilscaffold_70195150 Terpenoid UGT low borderline UGT__00078__sp_Q8W491_U73B3_ARATH
Hcilscaffold_70195160 Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Hcilscaffold_70200230 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Hcilscaffold_90225260 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Hcilscaffold_90226640 Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
Hcilscaffold_90226760 Terpenoid UGT low borderline UGT__00110__sp_Q9ZQ95_U73C6_ARATH
Hcilscaffold_90227200 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Hcilscaffold_90241450 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Hcilscaffold_90241460 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Hcilscaffold_90241530 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Hcilscaffold_90242120 Terpenoid UGT medium pass UGT__00008__sp_A0A0B6VIJ5_F6CGT_GENTR
Hcilscaffold_90242130 Terpenoid UGT low borderline UGT__00055__sp_O48676_U74B1_ARATH
Hcilscaffold_90242220 Terpenoid UGT medium pass UGT__00002__sp_A0A067YBQ3_UGT13_PUEML
Hcilscaffold_90256210 Terpenoid UGT low borderline UGT__00092__sp_Q9LNI1_U72B3_ARATH
Hcilscaffold_90257960 Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO