PlantSME Plant secondary metabolism enzyme database

Hedwigia ciliata (hedwigia_ciliata)

Imported from atlas release summary for Hedwigia ciliata.

627
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.2% Terpenoid pathway 23.44% Alkaloid pathway 20.57% Flavonoid pathway 14.04% Rosmarinic acid pathway 10.37% Steroid pathway 6.38%
Family Distribution
C4H 6.57% POD 5.36% C3'H/CYP98A 5.3% BAHD 5.23% 4CL 4.98% CYP76 4.59% NMT 3.77% PAL 3.25%
Other Families 60.94%
More Families (96)
IFS 39 2.49% STR 36 2.3% F3'H/CYP75B 36 2.3% PYKS 35 2.23% BR6OX2/CYP85A2 35 2.23% GS 34 2.17% F3H 34 2.17% IFR 32 2.04% T3O 28 1.79% UGT 28 1.79% IO 27 1.72% DWF4/CYP90B1 25 1.6% CODM/T6ODM 24 1.53% UFGT 24 1.53% CHS 24 1.53% 7DLGT 23 1.47% CAD 21 1.34% CYP71 21 1.34% TRI/TRII 17 1.08% G8O/G8H 16 1.02% H6H 15 0.96% SMT1/SMT2/SMT3 15 0.96% T16H 14 0.89% COMT 14 0.89% F3'5'H/CYP75A 13 0.83% HCT 13 0.83% CAS 13 0.83% LAC 12 0.77% CPD/CYP90A1 11 0.7% CSE 9 0.57% RAS 9 0.57% SLS 8 0.51% NCS 8 0.51% COR 8 0.51% DWF5 8 0.51% SGD 7 0.45% PMT 7 0.45% 7DLH 7 0.45% 16OMT 7 0.45% ANR 7 0.45% F5H/CYP84A 7 0.45% CCR 7 0.45% CYP90D1 7 0.45% CNMT 6 0.38% FNS 6 0.38% DFR 6 0.38% CPR 6 0.38% CYP51G1 6 0.38% SQS/FDFT1 6 0.38% TDC 5 0.32% 8HGO 5 0.32% TAT 5 0.32% FPPS 5 0.32% AACT 5 0.32% TPS 5 0.32% GGPPS 5 0.32% MPO 4 0.26% CYP719 4 0.26% GES 4 0.26% LAMT 4 0.26% CHI 4 0.26% DET2 4 0.26% ROT3/CYP90C1 4 0.26% MVK 4 0.26% DXS 4 0.26% 6OMT_4OMT_SOMT 3 0.19% BBE 3 0.19% ISY 3 0.19% ANS/LDOX 3 0.19% FLS 3 0.19% HPPR 3 0.19% BR6OX1/CYP85A1 3 0.19% HDR/IspH 3 0.19% HMGS 3 0.19% MVD 3 0.19% HDS/IspG 3 0.19% CYP80B1 2 0.13% XMT_MXMT_DXMT 2 0.13% ADC 2 0.13% TYDC_DDC 2 0.13% CCoAOMT 2 0.13% HYD1 2 0.13% SQE 2 0.13% SMO1/SMO2 2 0.13% IDI 2 0.13% MCT/IspD 2 0.13% CYP80F1 1 0.06% CPI1 1 0.06% DWF7 1 0.06% DWF1 1 0.06% FK 1 0.06% DXR 1 0.06% MDS/IspF 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 158 12 POD (78) View species results
Terpenoid pathway 147 19 BAHD (55) View species results
Alkaloid pathway 129 18 NMT (27) View species results
Flavonoid pathway 88 12 CHS (24) View species results
Rosmarinic acid pathway 65 7 C4H (24) View species results
Steroid pathway 40 14 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 572 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 104 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status Best Target
Hcilscaffold_50121530 Alkaloid MPO high pass MPO__00001__sp_A0A1S3XSG2_DAO1_TOBAC
Hcilscaffold_70197620 Alkaloid MPO medium pass MPO__00001__sp_A0A1S3XSG2_DAO1_TOBAC
Hcilscaffold_10008090 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Hcilscaffold_10013640 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hcilscaffold_10013650 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hcilscaffold_10017950 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hcilscaffold_20069860 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Hcilscaffold_70156000 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hcilscaffold_70173690 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Hcilscaffold_90257420 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Hcilscaffold_100043380 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Hcilscaffold_100047490 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Hcilscaffold_10007550 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Hcilscaffold_10011680 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
Hcilscaffold_10021400 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Hcilscaffold_10022290 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Hcilscaffold_10022340 Alkaloid NMT low borderline NMT__00032__sp_Q5PP37_ATXR2_ARATH
Hcilscaffold_10022930 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Hcilscaffold_10026580 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Hcilscaffold_110052080 Alkaloid NMT medium borderline NMT__00015__sp_C8YTM5_PEAM2_WHEAT
Hcilscaffold_20054140 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Hcilscaffold_20054790 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Hcilscaffold_20059580 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Hcilscaffold_20067830 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Hcilscaffold_20068170 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Hcilscaffold_20068340 Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
Hcilscaffold_20070040 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Hcilscaffold_20071010 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Hcilscaffold_30078510 Alkaloid NMT low borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Hcilscaffold_40094980 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Hcilscaffold_40095660 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Hcilscaffold_40098970 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Hcilscaffold_40115170 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Hcilscaffold_50115690 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Hcilscaffold_50119040 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Hcilscaffold_50119060 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Hcilscaffold_60138210 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Hcilscaffold_60145260 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Hcilscaffold_60147230 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Hcilscaffold_60152140 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Hcilscaffold_70157560 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Hcilscaffold_70157960 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Hcilscaffold_70159600 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Hcilscaffold_70164500 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Hcilscaffold_70164760 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Hcilscaffold_70166020 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Hcilscaffold_70178920 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Hcilscaffold_70180760 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Hcilscaffold_70186110 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Hcilscaffold_70186990 Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH