PlantSME Plant secondary metabolism enzyme database

Heliophila variabilis (heliophila_variabilis)

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Imported from atlas release summary for Heliophila variabilis.

1415
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.89% Alkaloid pathway 23.53% Phenylpropanoid pathway 22.47% Flavonoid pathway 12.37% Steroid pathway 6.08% Rosmarinic acid pathway 5.65%
Family Distribution
C4H 6.7% BAHD 6.35% C3'H/CYP98A 5.16% POD 4.81% CYP76 3.97% 4CL 3.74% UGT 3.51% UFGT 3.48%
Other Families 62.28%
More Families (98)
NMT 118 3.42% 7DLGT 118 3.42% F3H 98 2.84% IFS 94 2.73% STR 73 2.12% CODM/T6ODM 64 1.86% T3O 62 1.8% DWF4/CYP90B1 60 1.74% F3'H/CYP75B 58 1.68% CSE 51 1.48% SMT1/SMT2/SMT3 50 1.45% TPS 50 1.45% G8O/G8H 48 1.39% SGD 48 1.39% CAD 48 1.39% BR6OX2/CYP85A2 47 1.36% FNS 43 1.25% CAS 43 1.25% H6H 40 1.16% T16H 40 1.16% GES 40 1.16% PYKS 38 1.1% TRI/TRII 38 1.1% IFR 38 1.1% SLS 37 1.07% COMT 36 1.04% CYP71 34 0.99% LAC 31 0.9% TAT 29 0.84% F5H/CYP84A 25 0.72% HCT 24 0.7% LAMT 23 0.67% GS 23 0.67% ANR 23 0.67% BBE 22 0.64% PAL 21 0.61% CCR 19 0.55% CYP90D1 19 0.55% IO 17 0.49% BR6OX1/CYP85A1 16 0.46% GGPPS 16 0.46% F3'5'H/CYP75A 15 0.43% 7DLH 14 0.41% ANS/LDOX 14 0.41% RAS 13 0.38% FPPS 13 0.38% NCS 12 0.35% ROT3/CYP90C1 12 0.35% PMT 11 0.32% COR 11 0.32% 8HGO 11 0.32% MPO 9 0.26% HPPR 9 0.26% CPR 9 0.26% SQE 9 0.26% DFR 8 0.23% SQS/FDFT1 8 0.23% AACT 8 0.23% CNMT 7 0.2% CYP80F1 7 0.2% CYP80B1 7 0.2% CCoAOMT 7 0.2% CPD/CYP90A1 7 0.2% SMO1/SMO2 7 0.2% CHS 6 0.17% MVD 6 0.17% MVK 6 0.17% CYP719 5 0.14% DET2 5 0.14% DWF7 5 0.14% ADC 4 0.12% TDC 4 0.12% PMK 4 0.12% ODC 3 0.09% TYDC_DDC 3 0.09% 16OMT 3 0.09% CHI 3 0.09% MCT/IspD 3 0.09% DXS 3 0.09% HDR/IspH 3 0.09% HMGS 3 0.09% IDI 3 0.09% GPPS 3 0.09% ISY 2 0.06% XMT_MXMT_DXMT 2 0.06% 6OMT_4OMT_SOMT 2 0.06% FLS 2 0.06% CYP51G1 2 0.06% DWF1 2 0.06% HMGR 2 0.06% CMK/IspE 2 0.06% DWF5 1 0.03% HYD1 1 0.03% CPI1 1 0.03% FK 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 423 19 BAHD (163) View species results
Alkaloid pathway 333 23 NMT (62) View species results
Phenylpropanoid pathway 318 13 POD (140) View species results
Flavonoid pathway 175 13 UFGT (116) View species results
Steroid pathway 86 11 SMT1/SMT2/SMT3 (34) View species results
Rosmarinic acid pathway 80 7 4CL (27) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1172 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 256 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DXS
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Gene Pathway Family Confidence Status Best Target
heliophila_variabilis_HV02G032850 Terpenoid DXS medium pass DXS__00001__sp_Q38854_DXS_ARATH
heliophila_variabilis_HV09G017850 Terpenoid DXS medium pass DXS__00001__sp_Q38854_DXS_ARATH
heliophila_variabilis_HV10G010690 Terpenoid DXS medium pass DXS__00001__sp_Q38854_DXS_ARATH