PlantSME Plant secondary metabolism enzyme database

Juglans regia (juglans_regia)

Imported from atlas release summary for Juglans regia.

2303
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.31% Alkaloid pathway 22.84% Phenylpropanoid pathway 19.93% Flavonoid pathway 12.07% Rosmarinic acid pathway 9.08% Steroid pathway 7.77%
Family Distribution
C3'H/CYP98A 5.84% BAHD 5.67% C4H 5.54% IFS 3.95% CYP76 3.91% 4CL 3.78% UGT 3.48% T3O 3.46%
Other Families 64.38%
More Families (97)
POD 184 3.46% UFGT 177 3.33% 7DLGT 175 3.29% F3H 152 2.86% NMT 144 2.71% CAD 122 2.29% DWF4/CYP90B1 115 2.16% CAS 101 1.9% BR6OX2/CYP85A2 94 1.77% CODM/T6ODM 93 1.75% SMT1/SMT2/SMT3 84 1.58% STR 80 1.5% F3'H/CYP75B 80 1.5% TPS 73 1.37% TRI/TRII 70 1.32% GES 69 1.3% H6H 66 1.24% CYP71 66 1.24% HCT 62 1.16% SGD 60 1.13% GS 57 1.07% LAC 55 1.03% CYP90D1 54 1.01% COMT 53 1.0% CSE 50 0.94% IFR 49 0.92% PYKS 44 0.83% PAL 42 0.79% RAS 41 0.77% TAT 39 0.73% BBE 37 0.7% IO 37 0.7% PMT 36 0.68% T16H 36 0.68% FNS 36 0.68% 16OMT 33 0.62% ANR 33 0.62% COR 31 0.58% CNMT 30 0.56% LAMT 28 0.53% G8O/G8H 27 0.51% CPD/CYP90A1 26 0.49% CCR 25 0.47% SLS 24 0.45% 8HGO 24 0.45% F5H/CYP84A 24 0.45% 7DLH 23 0.43% NCS 23 0.43% BR6OX1/CYP85A1 22 0.41% F3'5'H/CYP75A 20 0.38% ROT3/CYP90C1 18 0.34% CYP719 15 0.28% CPR 15 0.28% MVD 14 0.26% CHS 13 0.24% CYP51G1 13 0.24% SQE 13 0.24% MPO 12 0.23% GGPPS 12 0.23% DFR 11 0.21% CCoAOMT 11 0.21% SQS/FDFT1 10 0.19% AACT 10 0.19% FPPS 10 0.19% ANS/LDOX 9 0.17% MVK 9 0.17% DXS 9 0.17% ISY 8 0.15% CHI 8 0.15% DET2 8 0.15% TYDC_DDC 6 0.11% HPPR 6 0.11% SMO1/SMO2 6 0.11% MCT/IspD 5 0.09% TDC 4 0.08% CYP80B1 4 0.08% DWF7 4 0.08% PMK 4 0.08% HMGS 3 0.06% CMK/IspE 3 0.06% HMGR 3 0.06% 6OMT_4OMT_SOMT 2 0.04% XMT_MXMT_DXMT 2 0.04% ADC 2 0.04% FLS 2 0.04% HYD1 2 0.04% DWF1 2 0.04% MDS/IspF 2 0.04% IDI 2 0.04% HDR/IspH 2 0.04% CYP80F1 1 0.02% ODC 1 0.02% CPI1 1 0.02% FK 1 0.02% DWF5 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 652 20 BAHD (258) View species results
Alkaloid pathway 526 24 7DLGT (80) View species results
Phenylpropanoid pathway 459 11 POD (181) View species results
Flavonoid pathway 278 12 UFGT (175) View species results
Rosmarinic acid pathway 209 7 C4H (86) View species results
Steroid pathway 179 11 CAS (88) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1907 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 405 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCoAOMT
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Gene Pathway Family Confidence Status Best Target
Jreg01G0025100.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00004__sp_O49499_CAMT4_ARATH
Jreg09G0004920.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00003__sp_A0A0S2UWT1_CAMT2_PETHY
Jreg10G0018240.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00004__sp_O49499_CAMT4_ARATH
Jreg10G0018250.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00004__sp_O49499_CAMT4_ARATH
Jreg10G0018260.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00004__sp_O49499_CAMT4_ARATH
Jreg10G0018270.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
Jreg10G0018280.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00004__sp_O49499_CAMT4_ARATH
Jreg13G0000850.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
Jreg13G0011700.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00004__sp_O49499_CAMT4_ARATH
Jreg13G0011710.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00004__sp_O49499_CAMT4_ARATH
Jreg16G0020180.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY