Juglans regia (juglans_regia)
Imported from atlas release summary for Juglans regia.
2303
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2303
Candidate Genes
C3'H/CYP98A
5.84%
BAHD
5.67%
C4H
5.54%
IFS
3.95%
CYP76
3.91%
4CL
3.78%
UGT
3.48%
T3O
3.46%
Other Families
64.38%
More Families (97)
POD
184
3.46%
UFGT
177
3.33%
7DLGT
175
3.29%
F3H
152
2.86%
NMT
144
2.71%
CAD
122
2.29%
DWF4/CYP90B1
115
2.16%
CAS
101
1.9%
BR6OX2/CYP85A2
94
1.77%
CODM/T6ODM
93
1.75%
SMT1/SMT2/SMT3
84
1.58%
STR
80
1.5%
F3'H/CYP75B
80
1.5%
TPS
73
1.37%
TRI/TRII
70
1.32%
GES
69
1.3%
H6H
66
1.24%
CYP71
66
1.24%
HCT
62
1.16%
SGD
60
1.13%
GS
57
1.07%
LAC
55
1.03%
CYP90D1
54
1.01%
COMT
53
1.0%
CSE
50
0.94%
IFR
49
0.92%
PYKS
44
0.83%
PAL
42
0.79%
RAS
41
0.77%
TAT
39
0.73%
BBE
37
0.7%
IO
37
0.7%
PMT
36
0.68%
T16H
36
0.68%
FNS
36
0.68%
16OMT
33
0.62%
ANR
33
0.62%
COR
31
0.58%
CNMT
30
0.56%
LAMT
28
0.53%
G8O/G8H
27
0.51%
CPD/CYP90A1
26
0.49%
CCR
25
0.47%
SLS
24
0.45%
8HGO
24
0.45%
F5H/CYP84A
24
0.45%
7DLH
23
0.43%
NCS
23
0.43%
BR6OX1/CYP85A1
22
0.41%
F3'5'H/CYP75A
20
0.38%
ROT3/CYP90C1
18
0.34%
CYP719
15
0.28%
CPR
15
0.28%
MVD
14
0.26%
CHS
13
0.24%
CYP51G1
13
0.24%
SQE
13
0.24%
MPO
12
0.23%
GGPPS
12
0.23%
DFR
11
0.21%
CCoAOMT
11
0.21%
SQS/FDFT1
10
0.19%
AACT
10
0.19%
FPPS
10
0.19%
ANS/LDOX
9
0.17%
MVK
9
0.17%
DXS
9
0.17%
ISY
8
0.15%
CHI
8
0.15%
DET2
8
0.15%
TYDC_DDC
6
0.11%
HPPR
6
0.11%
SMO1/SMO2
6
0.11%
MCT/IspD
5
0.09%
TDC
4
0.08%
CYP80B1
4
0.08%
DWF7
4
0.08%
PMK
4
0.08%
HMGS
3
0.06%
CMK/IspE
3
0.06%
HMGR
3
0.06%
6OMT_4OMT_SOMT
2
0.04%
XMT_MXMT_DXMT
2
0.04%
ADC
2
0.04%
FLS
2
0.04%
HYD1
2
0.04%
DWF1
2
0.04%
MDS/IspF
2
0.04%
IDI
2
0.04%
HDR/IspH
2
0.04%
CYP80F1
1
0.02%
ODC
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
DXR
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 652 | 20 | BAHD (258) | View species results |
| Alkaloid pathway | 526 | 24 | 7DLGT (80) | View species results |
| Phenylpropanoid pathway | 459 | 11 | POD (181) | View species results |
| Flavonoid pathway | 278 | 12 | UFGT (175) | View species results |
| Rosmarinic acid pathway | 209 | 7 | C4H (86) | View species results |
| Steroid pathway | 179 | 11 | CAS (88) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1907 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 405 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Jreg11G0000620.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Jreg11G0004330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg11G0004340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg11G0004350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg11G0005210.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg11G0019470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg11G0026490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg11G0026500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg12G0006760.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Jreg12G0008830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg12G0017670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg12G0017680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg12G0017740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg12G0017750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg13G0003670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg13G0003680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg13G0012200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg14G0008410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg14G0014240.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Jreg14G0014260.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Jreg14G0016090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg14G0017270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg14G0017830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg15G0008050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg15G0010260.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg16G0001700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg16G0001710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Jreg16G0012100.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Jreg16G0018590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| JregScaffold_7090002720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |