PlantSME Plant secondary metabolism enzyme database

Leucobryum albidum (leucobryum_albidum)

Imported from atlas release summary for Leucobryum albidum.

729
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.38% Terpenoid pathway 23.05% Alkaloid pathway 22.91% Flavonoid pathway 12.35% Rosmarinic acid pathway 10.7% Steroid pathway 5.62%
Family Distribution
C4H 7.16% C3'H/CYP98A 6.25% CYP76 4.9% 4CL 4.76% BAHD 4.47% POD 3.7% IFS 3.51% NMT 3.36%
Other Families 61.89%
More Families (95)
IFR 55 2.64% T3O 53 2.55% PAL 51 2.45% DWF4/CYP90B1 51 2.45% BR6OX2/CYP85A2 49 2.35% GS 47 2.26% F3'H/CYP75B 46 2.21% F3H 44 2.11% STR 43 2.07% TRI/TRII 38 1.83% UGT 36 1.73% 7DLGT 35 1.68% UFGT 33 1.59% IO 32 1.54% CODM/T6ODM 29 1.39% PYKS 28 1.35% T16H 25 1.2% COMT 25 1.2% CAD 21 1.01% SMT1/SMT2/SMT3 21 1.01% G8O/G8H 20 0.96% H6H 20 0.96% CNMT 18 0.86% 16OMT 18 0.86% LAC 18 0.86% SGD 17 0.82% FNS 17 0.82% CYP71 17 0.82% SLS 16 0.77% CHS 16 0.77% CAS 16 0.77% F3'5'H/CYP75A 15 0.72% CSE 15 0.72% CPD/CYP90A1 15 0.72% RAS 13 0.62% TDC 11 0.53% HCT 11 0.53% SQS/FDFT1 11 0.53% AACT 11 0.53% LAMT 10 0.48% ANR 10 0.48% CCR 10 0.48% 8HGO 9 0.43% COR 9 0.43% BR6OX1/CYP85A1 9 0.43% 7DLH 8 0.38% CYP90D1 8 0.38% CYP719 7 0.34% PMT 7 0.34% CYP80B1 7 0.34% DET2 7 0.34% GGPPS 7 0.34% F5H/CYP84A 6 0.29% TAT 6 0.29% FPPS 6 0.29% HDS/IspG 6 0.29% NCS 5 0.24% CPR 5 0.24% CYP51G1 5 0.24% SQE 5 0.24% MVK 5 0.24% MPO 4 0.19% BBE 4 0.19% DFR 4 0.19% ANS/LDOX 4 0.19% CCoAOMT 4 0.19% DWF5 4 0.19% DXS 4 0.19% CYP80F1 3 0.14% CHI 3 0.14% ROT3/CYP90C1 3 0.14% MCT/IspD 3 0.14% TPS 3 0.14% HMGS 3 0.14% ADC 2 0.1% ISY 2 0.1% GES 2 0.1% HPPR 2 0.1% SMO1/SMO2 2 0.1% FK 2 0.1% HYD1 2 0.1% 6OMT_4OMT_SOMT 1 0.05% TYDC_DDC 1 0.05% DWF7 1 0.05% DWF1 1 0.05% CPI1 1 0.05% IDI 1 0.05% CMK/IspE 1 0.05% MDS/IspF 1 0.05% HDR/IspH 1 0.05% GPPS 1 0.05% DXR 1 0.05% HMGR 1 0.05% MVD 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 185 10 POD (71) View species results
Terpenoid pathway 168 18 BAHD (62) View species results
Alkaloid pathway 167 20 NMT (26) View species results
Flavonoid pathway 90 11 UFGT (23) View species results
Rosmarinic acid pathway 78 7 C4H (28) View species results
Steroid pathway 41 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 849 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 117 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 16OMT
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Gene Pathway Family Confidence Status
Lalbi7167290050680 Alkaloid 16OMT medium borderline
Lalbi7434180066160 Alkaloid 16OMT medium borderline
Lalbi7459920069550 Alkaloid 16OMT medium pass
Lalbi7643420084560 Alkaloid 16OMT medium borderline
Lalbi7644340085680 Alkaloid 16OMT medium borderline
Lalbi7662130088500 Alkaloid 16OMT medium borderline
Lalbi7744880100160 Alkaloid 16OMT low borderline
Lalbi7796330122880 Alkaloid 16OMT medium borderline
Lalbi7855690150040 Alkaloid 16OMT medium borderline
Lalbi7869030164390 Alkaloid 16OMT medium borderline
Lalbi7889780178590 Alkaloid 16OMT medium borderline
Lalbi7892750185750 Alkaloid 16OMT medium borderline
Lalbi7896600189530 Alkaloid 16OMT medium borderline
Lalbi7911400208680 Alkaloid 16OMT medium borderline
Lalbi7919640223720 Alkaloid 16OMT medium borderline
Lalbi7936840254370 Alkaloid 16OMT medium borderline
Lalbi7949960277830 Alkaloid 16OMT medium borderline
Lalbi7960980303120 Alkaloid 16OMT medium borderline