PlantSME Plant secondary metabolism enzyme database

Leucobryum albidum (leucobryum_albidum)

Imported from atlas release summary for Leucobryum albidum.

729
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.38% Terpenoid pathway 23.05% Alkaloid pathway 22.91% Flavonoid pathway 12.35% Rosmarinic acid pathway 10.7% Steroid pathway 5.62%
Family Distribution
C4H 7.16% C3'H/CYP98A 6.25% CYP76 4.9% 4CL 4.76% BAHD 4.47% POD 3.7% IFS 3.51% NMT 3.36%
Other Families 61.89%
More Families (95)
IFR 55 2.64% T3O 53 2.55% PAL 51 2.45% DWF4/CYP90B1 51 2.45% BR6OX2/CYP85A2 49 2.35% GS 47 2.26% F3'H/CYP75B 46 2.21% F3H 44 2.11% STR 43 2.07% TRI/TRII 38 1.83% UGT 36 1.73% 7DLGT 35 1.68% UFGT 33 1.59% IO 32 1.54% CODM/T6ODM 29 1.39% PYKS 28 1.35% T16H 25 1.2% COMT 25 1.2% CAD 21 1.01% SMT1/SMT2/SMT3 21 1.01% G8O/G8H 20 0.96% H6H 20 0.96% CNMT 18 0.86% 16OMT 18 0.86% LAC 18 0.86% SGD 17 0.82% FNS 17 0.82% CYP71 17 0.82% SLS 16 0.77% CHS 16 0.77% CAS 16 0.77% F3'5'H/CYP75A 15 0.72% CSE 15 0.72% CPD/CYP90A1 15 0.72% RAS 13 0.62% TDC 11 0.53% HCT 11 0.53% SQS/FDFT1 11 0.53% AACT 11 0.53% LAMT 10 0.48% ANR 10 0.48% CCR 10 0.48% 8HGO 9 0.43% COR 9 0.43% BR6OX1/CYP85A1 9 0.43% 7DLH 8 0.38% CYP90D1 8 0.38% CYP719 7 0.34% PMT 7 0.34% CYP80B1 7 0.34% DET2 7 0.34% GGPPS 7 0.34% F5H/CYP84A 6 0.29% TAT 6 0.29% FPPS 6 0.29% HDS/IspG 6 0.29% NCS 5 0.24% CPR 5 0.24% CYP51G1 5 0.24% SQE 5 0.24% MVK 5 0.24% MPO 4 0.19% BBE 4 0.19% DFR 4 0.19% ANS/LDOX 4 0.19% CCoAOMT 4 0.19% DWF5 4 0.19% DXS 4 0.19% CYP80F1 3 0.14% CHI 3 0.14% ROT3/CYP90C1 3 0.14% MCT/IspD 3 0.14% TPS 3 0.14% HMGS 3 0.14% ADC 2 0.1% ISY 2 0.1% GES 2 0.1% HPPR 2 0.1% SMO1/SMO2 2 0.1% FK 2 0.1% HYD1 2 0.1% 6OMT_4OMT_SOMT 1 0.05% TYDC_DDC 1 0.05% DWF7 1 0.05% DWF1 1 0.05% CPI1 1 0.05% IDI 1 0.05% CMK/IspE 1 0.05% MDS/IspF 1 0.05% HDR/IspH 1 0.05% GPPS 1 0.05% DXR 1 0.05% HMGR 1 0.05% MVD 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 185 10 POD (71) View species results
Terpenoid pathway 168 18 BAHD (62) View species results
Alkaloid pathway 167 20 NMT (26) View species results
Flavonoid pathway 90 11 UFGT (23) View species results
Rosmarinic acid pathway 78 7 C4H (28) View species results
Steroid pathway 41 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 849 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 117 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Lalbi5439660011930 Alkaloid PYKS low borderline
Lalbi7029500045230 Alkaloid PYKS low borderline
Lalbi7174470052120 Alkaloid PYKS low borderline
Lalbi7421450063890 Alkaloid PYKS high pass
Lalbi7633470082460 Alkaloid PYKS medium pass
Lalbi7678140090930 Alkaloid PYKS high pass
Lalbi7796630123210 Alkaloid PYKS low borderline
Lalbi7801890124110 Alkaloid PYKS low borderline
Lalbi7840470142280 Alkaloid PYKS low borderline
Lalbi7846540147070 Alkaloid PYKS high pass
Lalbi7855160149090 Alkaloid PYKS high pass
Lalbi7880900172000 Alkaloid PYKS high pass
Lalbi7880900172010 Alkaloid PYKS medium pass
Lalbi7909000205340 Alkaloid PYKS high pass
Lalbi7910870206800 Alkaloid PYKS low borderline
Lalbi7927430236290 Alkaloid PYKS high pass
Lalbi7935600251280 Alkaloid PYKS low borderline
Lalbi7936280253590 Alkaloid PYKS low borderline
Lalbi7945700269750 Alkaloid PYKS low borderline
Lalbi7951060280330 Alkaloid PYKS high pass
Lalbi7958130297220 Alkaloid PYKS high pass
Lalbi7963010307320 Alkaloid PYKS high pass
Lalbi7964790311380 Alkaloid PYKS low borderline
Lalbi7966330316510 Alkaloid PYKS high pass
Lalbi7966330316520 Alkaloid PYKS high pass
Lalbi7966740317750 Alkaloid PYKS medium pass
Lalbi7969440323680 Alkaloid PYKS low borderline
Lalbi7973500329180 Alkaloid PYKS low borderline