PlantSME Plant secondary metabolism enzyme database

Leucobryum albidum (leucobryum_albidum)

Imported from atlas release summary for Leucobryum albidum.

729
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.38% Terpenoid pathway 23.05% Alkaloid pathway 22.91% Flavonoid pathway 12.35% Rosmarinic acid pathway 10.7% Steroid pathway 5.62%
Family Distribution
C4H 7.16% C3'H/CYP98A 6.25% CYP76 4.9% 4CL 4.76% BAHD 4.47% POD 3.7% IFS 3.51% NMT 3.36%
Other Families 61.89%
More Families (95)
IFR 55 2.64% T3O 53 2.55% PAL 51 2.45% DWF4/CYP90B1 51 2.45% BR6OX2/CYP85A2 49 2.35% GS 47 2.26% F3'H/CYP75B 46 2.21% F3H 44 2.11% STR 43 2.07% TRI/TRII 38 1.83% UGT 36 1.73% 7DLGT 35 1.68% UFGT 33 1.59% IO 32 1.54% CODM/T6ODM 29 1.39% PYKS 28 1.35% T16H 25 1.2% COMT 25 1.2% CAD 21 1.01% SMT1/SMT2/SMT3 21 1.01% G8O/G8H 20 0.96% H6H 20 0.96% CNMT 18 0.86% 16OMT 18 0.86% LAC 18 0.86% SGD 17 0.82% FNS 17 0.82% CYP71 17 0.82% SLS 16 0.77% CHS 16 0.77% CAS 16 0.77% F3'5'H/CYP75A 15 0.72% CSE 15 0.72% CPD/CYP90A1 15 0.72% RAS 13 0.62% TDC 11 0.53% HCT 11 0.53% SQS/FDFT1 11 0.53% AACT 11 0.53% LAMT 10 0.48% ANR 10 0.48% CCR 10 0.48% 8HGO 9 0.43% COR 9 0.43% BR6OX1/CYP85A1 9 0.43% 7DLH 8 0.38% CYP90D1 8 0.38% CYP719 7 0.34% PMT 7 0.34% CYP80B1 7 0.34% DET2 7 0.34% GGPPS 7 0.34% F5H/CYP84A 6 0.29% TAT 6 0.29% FPPS 6 0.29% HDS/IspG 6 0.29% NCS 5 0.24% CPR 5 0.24% CYP51G1 5 0.24% SQE 5 0.24% MVK 5 0.24% MPO 4 0.19% BBE 4 0.19% DFR 4 0.19% ANS/LDOX 4 0.19% CCoAOMT 4 0.19% DWF5 4 0.19% DXS 4 0.19% CYP80F1 3 0.14% CHI 3 0.14% ROT3/CYP90C1 3 0.14% MCT/IspD 3 0.14% TPS 3 0.14% HMGS 3 0.14% ADC 2 0.1% ISY 2 0.1% GES 2 0.1% HPPR 2 0.1% SMO1/SMO2 2 0.1% FK 2 0.1% HYD1 2 0.1% 6OMT_4OMT_SOMT 1 0.05% TYDC_DDC 1 0.05% DWF7 1 0.05% DWF1 1 0.05% CPI1 1 0.05% IDI 1 0.05% CMK/IspE 1 0.05% MDS/IspF 1 0.05% HDR/IspH 1 0.05% GPPS 1 0.05% DXR 1 0.05% HMGR 1 0.05% MVD 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 185 10 POD (71) View species results
Terpenoid pathway 168 18 BAHD (62) View species results
Alkaloid pathway 167 20 NMT (26) View species results
Flavonoid pathway 90 11 UFGT (23) View species results
Rosmarinic acid pathway 78 7 C4H (28) View species results
Steroid pathway 41 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 849 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 117 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
Lalbi5536050020900 Flavonoid FNS medium borderline
Lalbi5554190022570 Flavonoid FNS medium borderline
Lalbi6480330031460 Flavonoid FNS low borderline
Lalbi7049820046800 Flavonoid FNS low borderline
Lalbi7542850079640 Flavonoid FNS medium borderline
Lalbi7701580096830 Flavonoid FNS medium borderline
Lalbi7796050122610 Flavonoid FNS medium borderline
Lalbi7809420127050 Flavonoid FNS medium borderline
Lalbi7812420129370 Flavonoid FNS medium borderline
Lalbi7837210137040 Flavonoid FNS medium borderline
Lalbi7858250154340 Flavonoid FNS medium borderline
Lalbi7906660203650 Flavonoid FNS low borderline
Lalbi7910500206090 Flavonoid FNS medium borderline
Lalbi7933110245160 Flavonoid FNS medium pass
Lalbi7939750257600 Flavonoid FNS medium borderline
Lalbi7951100280540 Flavonoid FNS medium borderline
Lalbi7963010307260 Flavonoid FNS medium borderline