PlantSME Plant secondary metabolism enzyme database

Metzgeria hamata (metzgeria_hamata)

Imported from atlas release summary for Metzgeria hamata.

585
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.52% Terpenoid pathway 24.62% Alkaloid pathway 21.54% Flavonoid pathway 11.11% Rosmarinic acid pathway 9.4% Steroid pathway 5.81%
Family Distribution
C4H 7.52% BAHD 6.71% POD 6.33% C3'H/CYP98A 5.14% CYP76 5.02% IFS 3.95% 4CL 3.57% NMT 2.76%
Other Families 59.0%
More Families (96)
UGT 41 2.57% F3H 40 2.51% T3O 39 2.45% UFGT 37 2.32% 7DLGT 36 2.26% DWF4/CYP90B1 35 2.19% TRI/TRII 34 2.13% BR6OX2/CYP85A2 34 2.13% STR 33 2.07% IFR 32 2.01% GS 27 1.69% H6H 27 1.69% RAS 26 1.63% SMT1/SMT2/SMT3 24 1.5% T16H 22 1.38% HCT 19 1.19% CAD 19 1.19% COMT 17 1.07% PYKS 15 0.94% CODM/T6ODM 15 0.94% CSE 15 0.94% CNMT 14 0.88% F3'5'H/CYP75A 14 0.88% CYP71 14 0.88% IO 13 0.82% PMT 12 0.75% G8O/G8H 12 0.75% PAL 12 0.75% SGD 11 0.69% F3'H/CYP75B 11 0.69% SLS 10 0.63% CHS 9 0.56% ANR 9 0.56% CAS 9 0.56% ISY 8 0.5% CPD/CYP90A1 8 0.5% COR 7 0.44% 16OMT 6 0.38% DFR 6 0.38% HPPR 6 0.38% SQS/FDFT1 6 0.38% ROT3/CYP90C1 6 0.38% CYP90D1 6 0.38% AACT 6 0.38% GGPPS 6 0.38% NCS 5 0.31% ANS/LDOX 5 0.31% LAC 5 0.31% BR6OX1/CYP85A1 5 0.31% FPPS 5 0.31% 8HGO 4 0.25% CYP80B1 4 0.25% TDC 4 0.25% BBE 4 0.25% CYP719 4 0.25% FNS 4 0.25% F5H/CYP84A 4 0.25% CCoAOMT 4 0.25% CCR 4 0.25% 7DLH 3 0.19% ADC 3 0.19% CPR 3 0.19% TAT 3 0.19% CYP51G1 3 0.19% SMO1/SMO2 3 0.19% SQE 3 0.19% DET2 3 0.19% HMGR 3 0.19% MVK 3 0.19% MCT/IspD 3 0.19% GPPS 3 0.19% GES 2 0.13% LAMT 2 0.13% TYDC_DDC 2 0.13% XMT_MXMT_DXMT 2 0.13% MPO 2 0.13% DWF1 2 0.13% HMGS 2 0.13% DXS 2 0.13% MVD 2 0.13% TPS 2 0.13% IDI 2 0.13% 6OMT_4OMT_SOMT 1 0.06% CHI 1 0.06% FLS 1 0.06% DWF5 1 0.06% HYD1 1 0.06% CPI1 1 0.06% DWF7 1 0.06% FK 1 0.06% HDS/IspG 1 0.06% HDR/IspH 1 0.06% MDS/IspF 1 0.06% CMK/IspE 1 0.06% DXR 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 161 11 POD (96) View species results
Terpenoid pathway 144 21 BAHD (59) View species results
Alkaloid pathway 126 18 TRI/TRII (26) View species results
Flavonoid pathway 65 9 UFGT (28) View species results
Rosmarinic acid pathway 55 7 C4H (31) View species results
Steroid pathway 34 11 SMT1/SMT2/SMT3 (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 592 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 152 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Mhamcontig_1030003790 Alkaloid PMT low borderline
Mhamcontig_1040005160 Alkaloid PMT low borderline
Mhamcontig_1200024100 Alkaloid PMT low borderline
Mhamcontig_1310042270 Alkaloid PMT medium pass
Mhamcontig_1310051350 Alkaloid PMT low borderline
Mhamcontig_1730107230 Alkaloid PMT low borderline
Mhamcontig_1990141850 Alkaloid PMT low borderline
Mhamcontig_500221180 Alkaloid PMT medium borderline
Mhamcontig_710261030 Alkaloid PMT low borderline
Mhamcontig_710261040 Alkaloid PMT low borderline
Mhamcontig_770268380 Alkaloid PMT low borderline
Mhamcontig_80271900 Alkaloid PMT low borderline